RNA id: XR_005639825.1


Basic Information

Item Value
RNA id XR_005639825.1
length 887
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC120562769
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42719416 ~ 42720854 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCATGGATTTAGTCTCTGCTTTCTGCTTCTGTTGTTAGCTTGTTGTCGTACTTTTGTCAAGAAGTCTGTTCCTGTGCCAGCTGTTCCTGTGGTCCTGGTATCTTCCCTGTGATTGGACAGTCATCAGCTTACATATCCTCCAACCACTTCCCTCCTTCTGTCTGTTGGAGGATATTAGAGTTCTGCTCTTCATCTTCAGACTTTTTGCATTTTAGATTTTTACcttttctacatttttggaCTTTCGTACCTGGAACTTTCTTCTTCAACTCTGAGATAAACATGAAGATGTCTGTCTTTGCCTGTGTTCTGCTGATCTCTGCTGTCGAGATCTCTGTGGACGGGGAAACTCCAGCTGAAAAGTTCAAGAGACAGCATATCAACAAGGACATGGATCCTAAACACTGTGACGCTGTGATAAAGGAGAGAAAAATCCATCAAAACAATAGGGCTTTTTGTAAGAAGGAGAACACCTTCATCAGTGCGAGTTATGGCGTAGTTAAAAAGGTCTGTGAGAAGGAAGGAGAGCCATATCCAAATGATAGAAATCTGAGAATCAGCCTTAACTCGTTCAGAGTTGTTAATTGCAAATGCAAGGACAACATGAGGCCTCCCAACTGTGGCTGCAAAGGCTCTCGTCCCAACCTGAGAATTGTAATCGGTTGTGACAACAATGATAATCCAGTTCACTATCAAGAAGGTCTGTACATTACCTCCCTGAATGAGACTAAACTGTTTCTACCTGATGAATCGGAGTAAtttgttactacctgatgaatcagtaACTTAATACACATGTGACAGTTTAACTCTGGGTCTGTTTTTAATGCTGTCATGTTAACTGATTTATAAAGATGATGAAAATAAAGTGGGTGACAACTGAGA

Function

GO:

id name namespace
GO:0004518 nuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108416 lncRNA upstream 41552 42677376 ~ 42677864 (+) True G80714
TU108406 lncRNA upstream 79121 42632407 ~ 42640295 (+) False LOC120562767
TU108401 lncRNA upstream 96811 42617660 ~ 42622605 (+) True G80711
TU108389 lncRNA upstream 125839 42573994 ~ 42593577 (+) False G80702
TU108383 lncRNA upstream 143554 42573994 ~ 42575862 (+) False G80702
TU108422 lncRNA downstream 19972 42740826 ~ 42758626 (+) True G80719
XR_005639839.1 lncRNA downstream 58101 42778955 ~ 42780523 (+) True LOC120562780
XR_005639830.1 lncRNA downstream 62657 42783511 ~ 42786380 (+) False LOC120562772
XR_005639829.1 lncRNA downstream 62681 42783535 ~ 42786380 (+) False LOC120562772
XR_005639831.1 lncRNA downstream 62685 42783539 ~ 42786380 (+) False LOC120562772
XM_039806659.1 mRNA upstream 53413 42663518 ~ 42666003 (+) True LOC120562768
XM_039806658.1 mRNA upstream 75426 42635825 ~ 42643990 (+) True LOC120562767
XM_039806644.1 mRNA upstream 179815 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA upstream 181134 42535692 ~ 42538282 (+) False LOC120562757
XM_039806643.1 mRNA upstream 189934 42527496 ~ 42529482 (+) True LOC120562755
XM_039806651.1 mRNA downstream 43549 42764403 ~ 42768664 (+) True LOC120562762
XM_039806649.1 mRNA downstream 66855 42787709 ~ 42800596 (+) True LOC120562761
XM_039806650.1 mRNA downstream 66882 42787736 ~ 42800596 (+) False LOC120562761
XM_039806652.1 mRNA downstream 104744 42825598 ~ 42831659 (+) True LOC120562763
XM_039806655.1 mRNA downstream 104744 42825598 ~ 42831659 (+) False LOC120562763
XR_005639823.1 other upstream 181134 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other upstream 181134 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other upstream 181134 42533420 ~ 42538282 (+) False LOC120562757
TU108350 other upstream 233407 42485335 ~ 42486009 (+) True G80682
TU107914 other upstream 712822 42003373 ~ 42006594 (+) True G80410
TU108439 other downstream 62641 42783495 ~ 42786405 (+) False LOC120562772
TU108440 other downstream 62641 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile