RNA id: XR_005639834.1


Basic Information

Item Value
RNA id XR_005639834.1
length 411
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120562776
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42996148 ~ 42997128 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attcaacaaccaatagaatgccagctgtagtgttgaccaatgaaatgatccctgcCCCGTTGAAGATGCGTTCAATTtactgttgagggcggctgctctGTAACCAAGTTTAGCTATGTAGCTACCCCCGCGCCGTCCattgctttattataagtatatgtcaacaatgtgcacagagtGGTCGatgcactttcacctgcacccatcaGGAAACTGGAGAaagtccacaactacgagggtgtgactgaagtatccctgttgagctgcatcacagcacACTGGTCTATGCACTATGTGCAtgtatgtttcttgcttaaatccacacacaaccaggcctgggagagaaaattactgatatccacaaaaccaaatcagacaaggagcatactatataaagacaacagtggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108391 lncRNA upstream 16041 42573994 ~ 42980107 (+) True G80702
TU108445 lncRNA upstream 40622 42850597 ~ 42955526 (+) True G80732
TU108466 lncRNA upstream 44201 42947858 ~ 42951947 (+) True G80741
TU108386 lncRNA upstream 59283 42573994 ~ 42936865 (+) False G80702
TU108484 lncRNA downstream 901 42998029 ~ 43021744 (+) True G80751
TU108485 lncRNA downstream 1183 42998311 ~ 43021744 (+) False G80751
XM_039806647.1 mRNA upstream 83363 42907016 ~ 42912785 (+) True LOC120562760
XM_039806646.1 mRNA upstream 83363 42907018 ~ 42912785 (+) False LOC120562760
XM_039806655.1 mRNA upstream 164489 42825598 ~ 42831659 (+) False LOC120562763
TU108439 other upstream 209743 42783495 ~ 42786405 (+) False LOC120562772
TU108440 other upstream 209743 42783495 ~ 42786405 (+) False LOC120562772
XR_005639823.1 other upstream 457866 42532924 ~ 42538282 (+) False LOC120562757

Expression Profile