RNA id: XR_005639851.1


Basic Information

Item Value
RNA id XR_005639851.1
length 555
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC120562823
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18490124 ~ 18495344 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTcatcggatcaagcctttcattcaccataaaagaactcatcttaacccaGTTTCACTACGTATCTGGGATGGGGTGAAAAAGTCCTCGGCGCTCTCCGAGTACAGCCGCCTGCTCTGCTAACACCTTGGAGGAACTGCTGTCATATCCAATAGCAGTTGAAGCTGTTATGTCCAATAATCAGGTCACATGAAGAATAATTGTGgctctgaaagtggagatggTCGTCTGCACCCTACATGAGGGACAAGTGAAACTGGAAGCCCGTTCAATGGTGAAGAGTCTGATATAAAGCAGGACACCTTTCTGCAGACTTTGGTGGGAATGAAAACCTGTGGACTCTTGGCACTCCGTGTCAGAAAGTGGTGTATCCCTGCCATGTTGAACAGACACAGCTGAAGCCTGTACAGCAGtggtgagaaagagagatgaaaCCAGTTGTCTGCACACGTGTAagcaaaatgtgacatttttttaattttcaaaccATTATTGTAATTGCAGTTTTGGTGTACAAGTTTTCTcagattaaaatatataattctttctttttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97978 lncRNA upstream 20046 18467701 ~ 18470078 (+) True LOC120562806
TU97980 lncRNA upstream 28799 18455574 ~ 18461325 (+) True LOC120562807
TU97979 lncRNA upstream 41695 18440987 ~ 18448429 (+) True G73330
TU97975 lncRNA upstream 65721 18423989 ~ 18424403 (+) True G73326
TU97956 lncRNA upstream 94929 18391339 ~ 18395195 (+) True G73311
TU97987 lncRNA downstream 5807 18501151 ~ 18565082 (+) True G73338
TU98032 lncRNA downstream 191698 18687042 ~ 18692970 (+) True G73361
XR_005639852.1 lncRNA downstream 249325 18744669 ~ 18745404 (+) False LOC120562824
TU98059 lncRNA downstream 255001 18750345 ~ 18750799 (+) True G73377
TU98218 lncRNA downstream 317965 18813309 ~ 18815597 (+) True G73484
XM_039806712.1 mRNA upstream 11102 18474502 ~ 18479022 (+) True LOC120562809
XM_039806707.1 mRNA upstream 20580 18466428 ~ 18469544 (+) False LOC120562806
XM_039806708.1 mRNA upstream 28798 18457830 ~ 18461326 (+) False LOC120562807
XM_039806709.1 mRNA upstream 28798 18457830 ~ 18461326 (+) False LOC120562807
XM_039806710.1 mRNA upstream 28798 18458694 ~ 18461326 (+) False LOC120562807
XM_039806713.1 mRNA downstream 50329 18545673 ~ 18548197 (+) True LOC120562811
XM_039806694.1 mRNA downstream 137058 18632402 ~ 18637307 (+) False LOC120562796
XM_039805488.1 mRNA downstream 142865 18638209 ~ 18641329 (+) True LOC120562049
XM_039806723.1 mRNA downstream 157042 18652386 ~ 18655731 (+) True LOC120562819
XM_039805283.1 mRNA downstream 204958 18700302 ~ 18712968 (+) True LOC120561938
TU97972 other upstream 69797 18415098 ~ 18420327 (+) False kcnn4
XR_005639678.1 other upstream 71892 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other upstream 73136 18399056 ~ 18416988 (+) False kcnn4
TU97779 other upstream 710994 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 842938 17645513 ~ 17647186 (+) True G73123
XR_005639844.1 other downstream 137058 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other downstream 137062 18632406 ~ 18637307 (+) False LOC120562796
TU98016 other downstream 140092 18635436 ~ 18637307 (+) False LOC120562796
TU98024 other downstream 157067 18652411 ~ 18653637 (+) False LOC120562819
TU98057 other downstream 249318 18744662 ~ 18746675 (+) True LOC120562824

Expression Profile