RNA id: XR_005639855.1


Basic Information

Item Value
RNA id XR_005639855.1
length 336
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC120562851
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21724948 ~ 21725705 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGGAAACAACACGGTGGAGAATCCTGAGTACATTGTGTGAAATAAAAGGacatCAGTGTGACAAGTGTGTGACGTTGTGCGCTCCCTGGTGAAGCCCGTTTTTCAGAGTCTGTATTCTGTGAAATgCCTTTCTGCCAAATTGAAAATACTGCCAATGTTACAGAAATACCCCGGAGAAGTTATTGTGTCCTGTGTGGGTCTTAGCTCAGCTAACCATCaaaaaagctctttatcgagatgaattgtagatgagaatttgttgtttgtgtgtggtatgtgtgtacgtgtatatacatttgtgtatgtgtatatgtgtgtatatgtatatatttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99494 lncRNA upstream 389255 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 432568 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 434634 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 435573 21289171 ~ 21289375 (+) True G74286
TU99348 lncRNA upstream 481381 21243229 ~ 21243567 (+) True G74274
TU99850 lncRNA downstream 310573 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 357977 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 364915 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 389911 22115616 ~ 22116026 (+) True G74729
TU99938 lncRNA downstream 394033 22119738 ~ 22121346 (+) True G74732
XM_039806135.1 mRNA upstream 46090 21668490 ~ 21678858 (+) True znf687a
XM_039807260.1 mRNA upstream 57117 21661202 ~ 21667831 (+) True LOC120563136
XM_039805029.1 mRNA upstream 66418 21639092 ~ 21658530 (+) True LOC120561789
XM_039805030.1 mRNA upstream 66418 21639098 ~ 21658530 (+) False LOC120561789
XM_039805031.1 mRNA upstream 66418 21641818 ~ 21658530 (+) False LOC120561789
XM_039806487.1 mRNA downstream 38770 21764475 ~ 21767853 (+) True c7h1orf43
XM_039806488.1 mRNA downstream 39528 21765233 ~ 21767853 (+) False c7h1orf43
XM_039805303.1 mRNA downstream 79369 21805074 ~ 21818222 (+) True she
XM_039807314.1 mRNA downstream 92348 21818053 ~ 21835351 (+) True chrnb2
XM_039807315.1 mRNA downstream 100921 21826626 ~ 21835351 (+) False chrnb2
TU99582 other upstream 121718 21599055 ~ 21603230 (+) True them4
TU99513 other upstream 320345 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 713577 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 2075437 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2565953 19148613 ~ 19158995 (+) False G73570
TU99801 other downstream 43843 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 406873 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 411860 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 472089 22197794 ~ 22199818 (+) False kcnn3
TU100002 other downstream 559599 22285304 ~ 22288294 (+) False fam189b

Expression Profile