RNA id: XR_005639895.1


Basic Information

Item Value
RNA id XR_005639895.1
length 623
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC120563029
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39484951 ~ 39485980 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtgtgttttgtgtatattccagctaactttatttttttaagtggtaCTGTCTCAAAAGGGGAAACAGGATGTTCCATTTGTCGACAATGACAGGGGGAGGGTATAGATTTTACTATCTTCttataatgttatttaaaatacagtGATTGTGCTAGATAAGCCTTGTCACTGTTGTTGAATTGTTTCCAACTCAAAAGAAAGTAGTAATGTttcatgtacatttattttcatttagataTGTTGATAATTGTGATCGGCGAATCACCTGTGTATTGTGGTACATGCTCATGAGCGTCCCTCTCTCAGTCTGTTTTggaaactgagagagacagTAGTCTGAGAAGAGGGTGTGTGGAACTGATGCAGTCCCTGTCACATGTTGTGTCATTACAGGTATGGTTGCCAAAGAAAATAACCACTATACGATCATTTCAATTAATGTTTTACTatattgtgtaaatgttttgttatCTTTAGactgtgtaaatgttttgttatgCTCAGTCTGTTTTggaaactgagagagacagtagTCTGAGAAGAGGGTGTGTGGAACTGATGCAGTCCCTGTCACATGTTGTGTCATTACAGACTCACTCAGTAAAGCAAAGATCCAAAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639897.1 lncRNA upstream 5562 39475775 ~ 39479389 (+) True LOC120563031
TU106758 lncRNA upstream 30659 39434450 ~ 39454292 (+) False G79713
TU106764 lncRNA upstream 51830 39432313 ~ 39433121 (+) True G79717
TU106576 lncRNA upstream 60053 39417885 ~ 39424898 (+) True G79573
TU106760 lncRNA upstream 85664 39398655 ~ 39399287 (+) True G79714
XR_005639896.1 lncRNA downstream 13366 39499346 ~ 39501137 (+) True LOC120563030
TU107047 lncRNA downstream 73128 39559108 ~ 39575672 (+) False G79903
TU107048 lncRNA downstream 73128 39559108 ~ 39559992 (+) True G79903
XR_005639756.1 lncRNA downstream 88358 39574338 ~ 39588482 (+) True LOC120562366
TU107056 lncRNA downstream 170420 39656400 ~ 39656802 (+) True G79911
XM_039807012.1 mRNA upstream 57831 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA upstream 57831 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA upstream 57831 39425328 ~ 39427120 (+) False LOC120563008
XM_039807020.1 mRNA upstream 65278 39391948 ~ 39419673 (+) True LOC120563011
XM_039807030.1 mRNA upstream 153435 39321630 ~ 39331516 (+) True LOC120563019
XM_039806080.1 mRNA downstream 279193 39765173 ~ 39771420 (+) True LOC120562364
XM_039806203.1 mRNA downstream 295256 39781236 ~ 39803887 (+) True LOC120562494
XM_039806074.1 mRNA downstream 325875 39811855 ~ 39828704 (+) True LOC120562359
XM_039806205.1 mRNA downstream 438345 39924325 ~ 39979365 (+) True LOC120562496
XM_039806075.1 mRNA downstream 597050 40083030 ~ 40093260 (+) True LOC120562361
TU106769 other upstream 21110 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 30659 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 30659 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 163626 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 180881 39302039 ~ 39304070 (+) True dcst2
TU107036 other downstream 281947 39767927 ~ 39768850 (+) False LOC120562364
TU107204 other downstream 830759 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 848382 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 931098 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 933889 40419869 ~ 40420429 (+) False LOC120562499

Expression Profile