RNA id: XR_005639897.1


Basic Information

Item Value
RNA id XR_005639897.1
length 216
lncRNA type inter_gene
GC content 0.56
exon number 3
gene id LOC120563031
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39475775 ~ 39479389 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAACGAGTCTGAGGACAGACCAGACGCCAGAGGACTGCTGCTCAGcACCAAGCAGCTGATCATCGATGTCATCAGGACGCAGTCAGGTGACTCTCTGACAGACATGCTGAGAACCTCTGTGTCACATGACCAGGAAGTGTGTCATGATTGGCTGATGCAGCGGCGAGCTCGGCAGGACGCCCGCACGCCTGACAAGATGAAGAGGAACAAGTCG

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106758 lncRNA upstream 21483 39434450 ~ 39454292 (+) False G79713
TU106764 lncRNA upstream 42654 39432313 ~ 39433121 (+) True G79717
TU106578 lncRNA upstream 50877 39384945 ~ 39424898 (+) False G79573
XR_005639895.1 lncRNA downstream 5562 39484951 ~ 39485980 (+) True LOC120563029
XR_005639896.1 lncRNA downstream 19957 39499346 ~ 39501137 (+) True LOC120563030
TU107047 lncRNA downstream 79719 39559108 ~ 39575672 (+) False G79903
TU107048 lncRNA downstream 79719 39559108 ~ 39559992 (+) True G79903
XR_005639756.1 lncRNA downstream 94949 39574338 ~ 39588482 (+) True LOC120562366
XM_039807012.1 mRNA upstream 48655 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA upstream 48655 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA upstream 48655 39425328 ~ 39427120 (+) False LOC120563008
XM_039807020.1 mRNA upstream 56102 39391948 ~ 39419673 (+) True LOC120563011
XM_039807030.1 mRNA upstream 144259 39321630 ~ 39331516 (+) True LOC120563019
XM_039806080.1 mRNA downstream 285784 39765173 ~ 39771420 (+) True LOC120562364
XM_039806203.1 mRNA downstream 301847 39781236 ~ 39803887 (+) True LOC120562494
XM_039806074.1 mRNA downstream 332466 39811855 ~ 39828704 (+) True LOC120562359
XM_039806205.1 mRNA downstream 444936 39924325 ~ 39979365 (+) True LOC120562496
XM_039806075.1 mRNA downstream 603641 40083030 ~ 40093260 (+) True LOC120562361
TU106769 other upstream 11934 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 21483 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 21483 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 154450 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 171705 39302039 ~ 39304070 (+) True dcst2
TU107036 other downstream 288538 39767927 ~ 39768850 (+) False LOC120562364
TU107204 other downstream 837350 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 854973 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 937689 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 940480 40419869 ~ 40420429 (+) False LOC120562499

Expression Profile