RNA id: XR_005639898.1


Basic Information

Item Value
RNA id XR_005639898.1
length 451
lncRNA type intronic
GC content 0.47
exon number 2
gene id LOC120563032
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39335351 ~ 39335951 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctgAACCGACTTATTTCATCTTttcggtgcctaaacttaactttcgtCTCCTCATAACGCTCActctttctttcctaaaccGTAATCTCcgctcacagtcacctgttcTCAGGTAACTGAACCACACTGATACACCGAGCTGTGATGGGGGTCTGGggaccgagctgtgatggaggtctgtagaccgagctgtgatggaggtctggggaccgagctgtgatggaggtctgtggaccgagctgtgatggaggtctcAAAGCTCTGCAGCTGATGTCATGTGACCAGCCGGCCTTCTCCTAGTTCTCTTATGACATCATGTGAACCTGTTAATGAGAATGGGTTGAACCAACAGAGGATTGTTCTCTAAGGGTTAAATGTCAACTTAAAGCTGATGATATATGTGTGAATGATGTGTtcactaaaaataaaaacgtcACTTAGTGCAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106591 lncRNA upstream 11915 39321432 ~ 39323436 (+) False LOC120563019
TU106726 lncRNA upstream 27612 39230944 ~ 39307739 (+) True G79689
TU106595 lncRNA upstream 33963 39300168 ~ 39301388 (+) True G79587
TU106600 lncRNA upstream 103132 39229871 ~ 39232219 (+) True G79592
TU106723 lncRNA upstream 140359 39193980 ~ 39194992 (+) True G79686
XR_005639899.1 lncRNA downstream 23523 39359474 ~ 39360686 (+) True LOC120563033
TU106750 lncRNA downstream 44337 39380288 ~ 39381667 (+) False G79710
TU106752 lncRNA downstream 44337 39380288 ~ 39381628 (+) True G79710
TU106577 lncRNA downstream 46085 39382036 ~ 39424898 (+) False G79573
TU106578 lncRNA downstream 48994 39384945 ~ 39424898 (+) False G79573
XM_039807030.1 mRNA upstream 3835 39321630 ~ 39331516 (+) True LOC120563019
XM_039806202.1 mRNA upstream 29264 39302167 ~ 39306087 (+) False dcst2
XM_039806201.1 mRNA upstream 56848 39265833 ~ 39278503 (+) True LOC120562489
XM_039807037.1 mRNA upstream 304517 39020813 ~ 39030834 (+) False LOC120563022
XM_039807020.1 mRNA downstream 55997 39391948 ~ 39419673 (+) True LOC120563011
XM_039807012.1 mRNA downstream 89377 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA downstream 89377 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA downstream 89377 39425328 ~ 39427120 (+) False LOC120563008
XM_039806080.1 mRNA downstream 429222 39765173 ~ 39771420 (+) True LOC120562364
TU106586 other upstream 14026 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 31281 39302039 ~ 39304070 (+) True dcst2
TU106631 other upstream 624342 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 667827 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 890681 38433993 ~ 38444670 (+) False cmtm6
TU106757 other downstream 97510 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 97510 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 124497 39460448 ~ 39463841 (+) True G79722
TU107036 other downstream 431976 39767927 ~ 39768850 (+) False LOC120562364
TU107204 other downstream 980788 40316739 ~ 40321067 (+) True G80003

Expression Profile