RNA id: XR_005639907.1


Basic Information

Item Value
RNA id XR_005639907.1
length 232
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC120563080
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32951977 ~ 32952703 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGATTCTTAACATACTGTACTTAGTGGGACATAACCGACCGCATTCTCTTCTGATCACTGTGCACAGCACCATAGAAATaccagcaaacaaacaaaCTTTTGAATGGAATTCTTAAAGGGTTGGTTCACCCAAAAGATGCCATCGGTTTCAAATTACAGCATCTCTGGATAATCCCCAGACTTCACTCTGGACTTTTcttgttggaaatgatttctaCTAAATAAACAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104101 lncRNA upstream 130489 32821243 ~ 32821488 (+) True G77867
TU104096 lncRNA upstream 185469 32766271 ~ 32766508 (+) True G77862
TU104008 lncRNA upstream 498567 32453187 ~ 32453410 (+) True G77776
TU103989 lncRNA upstream 575064 32374697 ~ 32376913 (+) True G77762
TU103992 lncRNA upstream 582899 32360545 ~ 32369078 (+) True G77764
TU104139 lncRNA downstream 64818 33017521 ~ 33050500 (+) True G77887
TU104142 lncRNA downstream 69395 33022098 ~ 33029791 (+) False G77890
TU104143 lncRNA downstream 69395 33022098 ~ 33028671 (+) True G77890
TU104154 lncRNA downstream 98777 33051480 ~ 33052859 (+) True G77897
TU104152 lncRNA downstream 144925 33097628 ~ 33099548 (+) True G77895
XM_039806159.1 mRNA upstream 1267 32947311 ~ 32950710 (+) True LOC120562446
XM_039805771.1 mRNA upstream 40785 32905361 ~ 32911192 (+) True scnm1
XM_039805772.1 mRNA upstream 40785 32905395 ~ 32911192 (+) False scnm1
XM_039805770.1 mRNA upstream 40785 32906319 ~ 32911192 (+) False scnm1
XM_039805774.1 mRNA upstream 51648 32892531 ~ 32900329 (+) True tnfaip8l2b
XM_039805115.1 mRNA downstream 79536 33032239 ~ 33049137 (+) True hormad1
XM_039805114.1 mRNA downstream 81032 33033735 ~ 33049137 (+) False hormad1
XM_039804862.1 mRNA downstream 134487 33087190 ~ 33096138 (+) True onecutl
XM_039807226.1 mRNA downstream 223206 33175909 ~ 33200642 (+) True lingo4b
XM_039807225.1 mRNA downstream 243512 33196215 ~ 33200642 (+) False lingo4b
XR_005639638.1 other upstream 530505 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other upstream 530505 32405133 ~ 32421472 (+) False LOC120561717
TU103881 other upstream 972068 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 1815831 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 2827339 30123702 ~ 30124638 (+) True G77239
TU104140 other downstream 147710 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 673228 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 678336 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_357 other downstream 678939 33631642 ~ 33631713 (+) True trnap-agg_5
TU104301 other downstream 886373 33839076 ~ 33861112 (+) False bmper

Expression Profile