RNA id: XR_005639918.1


Basic Information

Item Value
RNA id XR_005639918.1
length 494
lncRNA type inter_gene
GC content 0.41
exon number 6
gene id LOC120563188
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36161780 ~ 36172164 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTACTTTCAGCCTCAAGTGTGTTTTAACAGCGACAGGTTGAGGTGTTGATCCGAAGACTGACCGATTTTGTGAAGTCAAGAAGATGAGTGGATCTGCGTCTACAAGTGGCCGTTTAATGGCTGAAGGGTCTCAACTCTTCAATGGAAATCCTCCAAACTTTCACACTGAACCCAGACCTTCACAACCATGGGTCCAGTCTATTTCAAGCAGTCAGGAGAACCAGAACACCCTGAAGGGGATTCAATGTGAGAGGAACGACTCCAAGGTGATTTATATAGACTTCTGAACCAAGCCTTTATCAAACAAGATTCACTGAAGTCAAGAAGATGAATAAATCTCAGAGAGGATCAGCGTCTTCAAATGTCAGTTTAATTCAACAATGAACATGAAGTGAGACAAATTGAAACAGTGTTTAACAGACATGAGGAGGACATCTTCAAGGCCAAACACTAACATGTTGTTATGGATTCATTAAAAGTAACCTAAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105341 lncRNA upstream 2478 36128879 ~ 36159302 (+) False G78759
TU105332 lncRNA upstream 2478 36143677 ~ 36159302 (+) False G78759
TU105342 lncRNA upstream 28500 36128879 ~ 36133280 (+) True G78759
TU105328 lncRNA upstream 73684 36087873 ~ 36088096 (+) True G78756
TU105307 lncRNA upstream 127128 36034348 ~ 36034652 (+) True G78736
TU105368 lncRNA downstream 85996 36258160 ~ 36294387 (+) False G78772
TU105373 lncRNA downstream 116628 36288792 ~ 36289154 (+) True G78776
TU105357 lncRNA downstream 162953 36335117 ~ 36339554 (+) True G78770
TU105400 lncRNA downstream 225885 36398049 ~ 36415884 (+) True G78798
TU105421 lncRNA downstream 274483 36446647 ~ 36447215 (+) False G78813
XM_039807327.1 mRNA upstream 32538 36111050 ~ 36129242 (+) False LOC120563175
XM_039807329.1 mRNA downstream 6043 36178207 ~ 36190415 (+) True LOC120563177
XM_039807330.1 mRNA downstream 6043 36178207 ~ 36190415 (+) False LOC120563177
XM_039807339.1 mRNA downstream 188536 36360700 ~ 36367025 (+) True nat16l
XM_039807338.1 mRNA downstream 196530 36368694 ~ 36383096 (+) True LOC120563182
XM_039807337.1 mRNA downstream 220093 36392257 ~ 36450204 (+) True LOC120563181
TU105334 other upstream 20558 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 273608 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 753098 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 973581 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 1305248 34839157 ~ 34856532 (+) False LOC120562567
TU105369 other downstream 121823 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 220088 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 220088 36392252 ~ 36465230 (+) False LOC120563181
TU105437 other downstream 519229 36691393 ~ 36703865 (+) True LOC120562457
TU105558 other downstream 754548 36926712 ~ 36928871 (+) False G78888

Expression Profile