RNA id: unassigned_transcript_278



Basic Information


Item Value
RNA id unassigned_transcript_278
length 73
RNA type tRNA
GC content 0.52
exon number 1
gene id trnar-ucg_2
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17855 ~ 17927 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


aaccGCGTGGCCTAATGGACAAGGCGTCTGACTTCGAATCAGAAGATTGAGGGTTCGAGTCCCTTCGTGGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93166 lncRNA upstream 40701 58628 ~ 60100 (-) True G69532
TU93168 lncRNA upstream 40775 58702 ~ 60100 (-) False G69532
TU93169 lncRNA upstream 40775 58702 ~ 60100 (-) False G69532
TU93176 lncRNA upstream 137147 155074 ~ 155292 (-) True G69539
TU93185 lncRNA upstream 199901 217828 ~ 233498 (-) True G69541
XM_039805286.1 mRNA upstream 139330 157257 ~ 178298 (-) True LOC120561943
XM_039805287.1 mRNA upstream 139330 157257 ~ 178297 (-) False LOC120561943
XM_039805638.1 mRNA upstream 277580 295507 ~ 321882 (-) True spag1b
XM_039805639.1 mRNA upstream 277580 295507 ~ 320816 (-) False spag1b
XM_039805631.1 mRNA upstream 326611 344538 ~ 724566 (-) False LOC120562122
unassigned_transcript_277 other downstream 614 17167 ~ 17241 (-) True trnai-aau_5
unassigned_transcript_276 other downstream 948 16835 ~ 16907 (-) True trnar-ucg_1
unassigned_transcript_275 other downstream 1635 16147 ~ 16220 (-) True trnai-aau_4
unassigned_transcript_274 other downstream 1991 15792 ~ 15864 (-) True trnar-ucg
unassigned_transcript_273 other downstream 2678 15104 ~ 15177 (-) True trnai-aau_3
unassigned_transcript_279 other upstream 286 18213 ~ 18287 (-) True trnai-aau_6
unassigned_transcript_280 other upstream 1326 19253 ~ 19326 (-) True trnai-aau_7
unassigned_transcript_281 other upstream 2021 19948 ~ 20020 (-) True trnar-ucg_3
unassigned_transcript_282 other upstream 3409 21336 ~ 21409 (-) True trnai-aau_8
unassigned_transcript_283 other upstream 4097 22024 ~ 22096 (-) True trnar-ucg_4