RNA id: unassigned_transcript_305


Basic Information

Item Value
RNA id unassigned_transcript_305
length 74
RNA type tRNA
GC content 0.53
exon number 1
gene id trnai-aau_22
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 4112851 ~ 4112924 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTGGTTAGCTCAGATGGTTAGAGCGTGGTGCTAATAAGGCCAAGGTCATGGGTTCGATCCCCATACTGGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94386 lncRNA upstream 17193 4095448 ~ 4095658 (+) True G70503
TU94378 lncRNA upstream 22782 4084720 ~ 4090069 (+) True G70496
TU94377 lncRNA upstream 31642 4080917 ~ 4081209 (+) True G70495
XR_005639629.1 lncRNA upstream 73503 4037931 ~ 4039348 (+) True LOC120561653
TU94336 lncRNA upstream 185806 3926692 ~ 3927045 (+) True G70466
TU94390 lncRNA downstream 2041 4114965 ~ 4115274 (+) True G70507
TU94401 lncRNA downstream 48580 4161504 ~ 4161741 (+) True G70518
TU94406 lncRNA downstream 61216 4174140 ~ 4174388 (+) True G70523
TU94411 lncRNA downstream 94637 4207561 ~ 4249240 (+) True G70525
TU94434 lncRNA downstream 285378 4398302 ~ 4398547 (+) True G70542
XM_039804812.1 mRNA upstream 196433 3909276 ~ 3916418 (+) True gdf6a
XM_039804818.1 mRNA upstream 222793 3889015 ~ 3890058 (+) True LOC120561648
XM_039804820.1 mRNA upstream 239951 3854146 ~ 3872900 (+) False ebag9
XM_039804819.1 mRNA upstream 239951 3854147 ~ 3872900 (+) True ebag9
XM_039805143.1 mRNA upstream 485170 3625938 ~ 3627681 (+) True LOC120561848
XM_039806964.1 mRNA downstream 350513 4463437 ~ 4472667 (+) True seh1l
XM_039806970.1 mRNA downstream 361082 4474006 ~ 4571309 (+) False cep192
XM_039806969.1 mRNA downstream 361082 4474006 ~ 4571309 (+) False cep192
XM_039806965.1 mRNA downstream 361083 4474007 ~ 4571309 (+) True cep192
XM_039806966.1 mRNA downstream 361083 4474007 ~ 4571309 (+) False cep192
unassigned_transcript_304 other upstream 616 4112163 ~ 4112235 (+) True trnar-ucg_12
unassigned_transcript_303 other upstream 974 4111804 ~ 4111877 (+) True trnai-aau_21
unassigned_transcript_302 other upstream 4122 4108656 ~ 4108729 (+) True trnai-aau_20
unassigned_transcript_301 other upstream 4812 4107967 ~ 4108039 (+) True trnar-ucg_11
unassigned_transcript_300 other upstream 5170 4107608 ~ 4107681 (+) True trnai-aau_19
unassigned_transcript_306 other downstream 285 4113209 ~ 4113281 (+) True trnar-ucg_13
TU94562 other downstream 552860 4665784 ~ 4666106 (+) True G70654
XR_005639716.1 other downstream 1223290 5336214 ~ 5417921 (+) False LOC120562244
XR_005639717.1 other downstream 1478275 5591199 ~ 5593049 (+) False si:ch211-198c19.1
TU94835 other downstream 1847531 5960455 ~ 5960854 (+) True G70894