RNA id: unassigned_transcript_307


Basic Information

Item Value
RNA id unassigned_transcript_307
length 73
RNA type tRNA
GC content 0.52
exon number 2
gene id trnay-gua_1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8810351 ~ 8810439 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CcttcgatagctcagttggtagagcggaggactgtagATCCTTAGGTTGCTGGTTCGACTCTGGCTAGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95576 lncRNA upstream 33843 8770205 ~ 8776508 (+) True LOC120561899
TU95570 lncRNA upstream 41287 8768688 ~ 8769064 (+) True G71475
TU95571 lncRNA upstream 44217 8765894 ~ 8766134 (+) True G71476
TU95558 lncRNA upstream 66561 8743528 ~ 8743790 (+) True G71463
XR_005639619.1 lncRNA upstream 162642 8646964 ~ 8647709 (+) True LOC120561615
TU95621 lncRNA downstream 312724 9123163 ~ 9125732 (+) True G71517
TU95622 lncRNA downstream 312803 9123242 ~ 9125732 (+) False G71517
TU95620 lncRNA downstream 312883 9123322 ~ 9125732 (+) False G71517
TU95667 lncRNA downstream 510013 9320452 ~ 9320696 (+) True G71553
TU95668 lncRNA downstream 513378 9323817 ~ 9324017 (+) True G71554
XM_039805233.1 mRNA upstream 35529 8760046 ~ 8774822 (+) False LOC120561899
XM_039805857.1 mRNA upstream 305899 8454764 ~ 8504452 (+) True LOC120562241
XM_039806352.1 mRNA upstream 425731 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA upstream 425731 8366524 ~ 8384620 (+) False pomgnt2
XM_039805237.1 mRNA upstream 500828 8283380 ~ 8309523 (+) False ano10a
XM_039806986.1 mRNA downstream 277745 9088184 ~ 9101502 (+) True LOC120562991
XM_039806987.1 mRNA downstream 277750 9088189 ~ 9101502 (+) False LOC120562991
XM_039804863.1 mRNA downstream 305272 9115711 ~ 9123087 (+) True popdc3
XM_039807105.1 mRNA downstream 317411 9127850 ~ 9144754 (+) False bves
XM_039807106.1 mRNA downstream 317411 9127850 ~ 9144293 (+) True bves
TU95565 other upstream 58908 8748943 ~ 8751443 (+) True G71470
XR_005639665.1 other upstream 500607 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other upstream 500607 8283381 ~ 8309744 (+) False ano10a
TU95377 other upstream 688112 8121601 ~ 8122239 (+) True G71309
TU95170 other upstream 1008971 7731022 ~ 7801380 (+) True G71147
unassigned_transcript_308 other downstream 295 8810734 ~ 8810823 (+) True trnay-gua_2
unassigned_transcript_309 other downstream 670 8811109 ~ 8811197 (+) True trnay-gua_3
unassigned_transcript_310 other downstream 1809 8812248 ~ 8812336 (+) True trnay-gua_4
unassigned_transcript_311 other downstream 2907 8813346 ~ 8813434 (+) True trnay-gua_5
unassigned_transcript_312 other downstream 4810 8815249 ~ 8815337 (+) True trnay-gua_6