RNA id: unassigned_transcript_338


Basic Information

Item Value
RNA id unassigned_transcript_338
length 73
RNA type tRNA
GC content 0.52
exon number 2
gene id trnay-gua_32
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8840171 ~ 8840259 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CcttcgatagctcagttggtagagcggaggactgtagATCCTTAGGTCGCTGGTTCAACTCTGGCTCGAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95576 lncRNA upstream 63663 8770205 ~ 8776508 (+) True LOC120561899
TU95570 lncRNA upstream 71107 8768688 ~ 8769064 (+) True G71475
TU95571 lncRNA upstream 74037 8765894 ~ 8766134 (+) True G71476
TU95558 lncRNA upstream 96381 8743528 ~ 8743790 (+) True G71463
XR_005639619.1 lncRNA upstream 192462 8646964 ~ 8647709 (+) True LOC120561615
TU95621 lncRNA downstream 282904 9123163 ~ 9125732 (+) True G71517
TU95622 lncRNA downstream 282983 9123242 ~ 9125732 (+) False G71517
TU95620 lncRNA downstream 283063 9123322 ~ 9125732 (+) False G71517
TU95667 lncRNA downstream 480193 9320452 ~ 9320696 (+) True G71553
TU95668 lncRNA downstream 483558 9323817 ~ 9324017 (+) True G71554
XM_039805233.1 mRNA upstream 65349 8760046 ~ 8774822 (+) False LOC120561899
XM_039805857.1 mRNA upstream 335719 8454764 ~ 8504452 (+) True LOC120562241
XM_039806352.1 mRNA upstream 455551 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA upstream 455551 8366524 ~ 8384620 (+) False pomgnt2
XM_039805236.1 mRNA upstream 532106 8283381 ~ 8308065 (+) False ano10a
XM_039806986.1 mRNA downstream 247925 9088184 ~ 9101502 (+) True LOC120562991
XM_039806987.1 mRNA downstream 247930 9088189 ~ 9101502 (+) False LOC120562991
XM_039804863.1 mRNA downstream 275452 9115711 ~ 9123087 (+) True popdc3
XM_039807105.1 mRNA downstream 287591 9127850 ~ 9144754 (+) False bves
XM_039807106.1 mRNA downstream 287591 9127850 ~ 9144293 (+) True bves
unassigned_transcript_337 other upstream 948 8839135 ~ 8839223 (+) True trnay-gua_31
unassigned_transcript_336 other upstream 2922 8837161 ~ 8837249 (+) True trnay-gua_30
unassigned_transcript_335 other upstream 3881 8836202 ~ 8836290 (+) True trnay-gua_29
unassigned_transcript_334 other upstream 4207 8835876 ~ 8835964 (+) True trnay-gua_28
unassigned_transcript_333 other upstream 4971 8835112 ~ 8835200 (+) True trnay-gua_27
unassigned_transcript_339 other downstream 1699 8841958 ~ 8842046 (+) True trnay-gua_33
unassigned_transcript_340 other downstream 2025 8842284 ~ 8842372 (+) True trnay-gua_34
unassigned_transcript_341 other downstream 3511 8843770 ~ 8843858 (+) True trnay-gua_35
unassigned_transcript_342 other downstream 4261 8844520 ~ 8844608 (+) True trnay-gua_36
unassigned_transcript_343 other downstream 4587 8844846 ~ 8844934 (+) True trnay-gua_37