RNA id: unassigned_transcript_341


Basic Information

Item Value
RNA id unassigned_transcript_341
length 73
RNA type tRNA
GC content 0.52
exon number 2
gene id trnay-gua_35
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8843770 ~ 8843858 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CcttcgatagctcagttggtagaggggaggactgtagATCCTTAGGTGGCTGGTTTAATTCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95576 lncRNA upstream 67262 8770205 ~ 8776508 (+) True LOC120561899
TU95570 lncRNA upstream 74706 8768688 ~ 8769064 (+) True G71475
TU95571 lncRNA upstream 77636 8765894 ~ 8766134 (+) True G71476
TU95558 lncRNA upstream 99980 8743528 ~ 8743790 (+) True G71463
XR_005639619.1 lncRNA upstream 196061 8646964 ~ 8647709 (+) True LOC120561615
TU95621 lncRNA downstream 279305 9123163 ~ 9125732 (+) True G71517
TU95622 lncRNA downstream 279384 9123242 ~ 9125732 (+) False G71517
TU95620 lncRNA downstream 279464 9123322 ~ 9125732 (+) False G71517
TU95667 lncRNA downstream 476594 9320452 ~ 9320696 (+) True G71553
TU95668 lncRNA downstream 479959 9323817 ~ 9324017 (+) True G71554
XM_039805233.1 mRNA upstream 68948 8760046 ~ 8774822 (+) False LOC120561899
XM_039805857.1 mRNA upstream 339318 8454764 ~ 8504452 (+) True LOC120562241
XM_039806352.1 mRNA upstream 459150 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA upstream 459150 8366524 ~ 8384620 (+) False pomgnt2
XM_039805236.1 mRNA upstream 535705 8283381 ~ 8308065 (+) False ano10a
XM_039806986.1 mRNA downstream 244326 9088184 ~ 9101502 (+) True LOC120562991
XM_039806987.1 mRNA downstream 244331 9088189 ~ 9101502 (+) False LOC120562991
XM_039804863.1 mRNA downstream 271853 9115711 ~ 9123087 (+) True popdc3
XM_039807105.1 mRNA downstream 283992 9127850 ~ 9144754 (+) False bves
XM_039807106.1 mRNA downstream 283992 9127850 ~ 9144293 (+) True bves
unassigned_transcript_340 other upstream 1398 8842284 ~ 8842372 (+) True trnay-gua_34
unassigned_transcript_339 other upstream 1724 8841958 ~ 8842046 (+) True trnay-gua_33
unassigned_transcript_338 other upstream 3511 8840171 ~ 8840259 (+) True trnay-gua_32
unassigned_transcript_337 other upstream 4547 8839135 ~ 8839223 (+) True trnay-gua_31
unassigned_transcript_336 other upstream 6521 8837161 ~ 8837249 (+) True trnay-gua_30
unassigned_transcript_342 other downstream 662 8844520 ~ 8844608 (+) True trnay-gua_36
unassigned_transcript_343 other downstream 988 8844846 ~ 8844934 (+) True trnay-gua_37
unassigned_transcript_344 other downstream 3209 8847067 ~ 8847155 (+) True trnay-gua_38
unassigned_transcript_345 other downstream 3534 8847392 ~ 8847481 (+) True trnay-gua_39
unassigned_transcript_346 other downstream 4625 8848483 ~ 8848571 (+) True trnay-gua_40