RNA id: unassigned_transcript_344


Basic Information

Item Value
RNA id unassigned_transcript_344
length 73
RNA type tRNA
GC content 0.52
exon number 2
gene id trnay-gua_38
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8847067 ~ 8847155 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CcttcgatagctcagttggtagaggggaggactgtagATCCTTAGGTGGCTGGTTTAATTCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95576 lncRNA upstream 70559 8770205 ~ 8776508 (+) True LOC120561899
TU95570 lncRNA upstream 78003 8768688 ~ 8769064 (+) True G71475
TU95571 lncRNA upstream 80933 8765894 ~ 8766134 (+) True G71476
TU95558 lncRNA upstream 103277 8743528 ~ 8743790 (+) True G71463
XR_005639619.1 lncRNA upstream 199358 8646964 ~ 8647709 (+) True LOC120561615
TU95621 lncRNA downstream 276008 9123163 ~ 9125732 (+) True G71517
TU95622 lncRNA downstream 276087 9123242 ~ 9125732 (+) False G71517
TU95620 lncRNA downstream 276167 9123322 ~ 9125732 (+) False G71517
TU95667 lncRNA downstream 473297 9320452 ~ 9320696 (+) True G71553
TU95668 lncRNA downstream 476662 9323817 ~ 9324017 (+) True G71554
XM_039805233.1 mRNA upstream 72245 8760046 ~ 8774822 (+) False LOC120561899
XM_039805857.1 mRNA upstream 342615 8454764 ~ 8504452 (+) True LOC120562241
XM_039806352.1 mRNA upstream 462447 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA upstream 462447 8366524 ~ 8384620 (+) False pomgnt2
XM_039805236.1 mRNA upstream 539002 8283381 ~ 8308065 (+) False ano10a
XM_039806986.1 mRNA downstream 241029 9088184 ~ 9101502 (+) True LOC120562991
XM_039806987.1 mRNA downstream 241034 9088189 ~ 9101502 (+) False LOC120562991
XM_039804863.1 mRNA downstream 268556 9115711 ~ 9123087 (+) True popdc3
XM_039807105.1 mRNA downstream 280695 9127850 ~ 9144754 (+) False bves
XM_039807106.1 mRNA downstream 280695 9127850 ~ 9144293 (+) True bves
unassigned_transcript_343 other upstream 2133 8844846 ~ 8844934 (+) True trnay-gua_37
unassigned_transcript_342 other upstream 2459 8844520 ~ 8844608 (+) True trnay-gua_36
unassigned_transcript_341 other upstream 3209 8843770 ~ 8843858 (+) True trnay-gua_35
unassigned_transcript_340 other upstream 4695 8842284 ~ 8842372 (+) True trnay-gua_34
unassigned_transcript_339 other upstream 5021 8841958 ~ 8842046 (+) True trnay-gua_33
unassigned_transcript_345 other downstream 237 8847392 ~ 8847481 (+) True trnay-gua_39
unassigned_transcript_346 other downstream 1328 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_347 other downstream 2094 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_348 other downstream 2477 8849632 ~ 8849720 (+) True trnay-gua_42
TU95730 other downstream 1360260 10207415 ~ 10208197 (+) True G71610