RNA id: unassigned_transcript_348


Basic Information

Item Value
RNA id unassigned_transcript_348
length 73
RNA type tRNA
GC content 0.51
exon number 2
gene id trnay-gua_42
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8849632 ~ 8849720 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CcttcgatagctcagttggtagagcggaggACTGTAGATCCTTAGGTGGCTGGTTTAATTCCAGCTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95576 lncRNA upstream 73124 8770205 ~ 8776508 (+) True LOC120561899
TU95570 lncRNA upstream 80568 8768688 ~ 8769064 (+) True G71475
TU95571 lncRNA upstream 83498 8765894 ~ 8766134 (+) True G71476
TU95558 lncRNA upstream 105842 8743528 ~ 8743790 (+) True G71463
XR_005639619.1 lncRNA upstream 201923 8646964 ~ 8647709 (+) True LOC120561615
TU95621 lncRNA downstream 273443 9123163 ~ 9125732 (+) True G71517
TU95622 lncRNA downstream 273522 9123242 ~ 9125732 (+) False G71517
TU95620 lncRNA downstream 273602 9123322 ~ 9125732 (+) False G71517
TU95667 lncRNA downstream 470732 9320452 ~ 9320696 (+) True G71553
TU95668 lncRNA downstream 474097 9323817 ~ 9324017 (+) True G71554
XM_039805233.1 mRNA upstream 74810 8760046 ~ 8774822 (+) False LOC120561899
XM_039805857.1 mRNA upstream 345180 8454764 ~ 8504452 (+) True LOC120562241
XM_039806352.1 mRNA upstream 465012 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA upstream 465012 8366524 ~ 8384620 (+) False pomgnt2
XM_039805236.1 mRNA upstream 541567 8283381 ~ 8308065 (+) False ano10a
XM_039806986.1 mRNA downstream 238464 9088184 ~ 9101502 (+) True LOC120562991
XM_039806987.1 mRNA downstream 238469 9088189 ~ 9101502 (+) False LOC120562991
XM_039804863.1 mRNA downstream 265991 9115711 ~ 9123087 (+) True popdc3
XM_039807105.1 mRNA downstream 278130 9127850 ~ 9144754 (+) False bves
XM_039807106.1 mRNA downstream 278130 9127850 ~ 9144293 (+) True bves
unassigned_transcript_347 other upstream 295 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 1061 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 2151 8847392 ~ 8847481 (+) True trnay-gua_39
unassigned_transcript_344 other upstream 2477 8847067 ~ 8847155 (+) True trnay-gua_38
unassigned_transcript_343 other upstream 4698 8844846 ~ 8844934 (+) True trnay-gua_37
TU95730 other downstream 1357695 10207415 ~ 10208197 (+) True G71610
TU95885 other downstream 1935934 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 1970575 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 1970575 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 2749317 11599037 ~ 11616242 (+) True G71896