RNA id: unassigned_transcript_357


Basic Information

Item Value
RNA id unassigned_transcript_357
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnap-agg_5
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33631642 ~ 33631713 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggctcgttggtctaggggtatgattctcgcttAGGGTGCGAGAGgtcccgggttcaaatcccggACGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104275 lncRNA upstream 43386 33564020 ~ 33588256 (+) True G78000
XR_005639668.1 lncRNA upstream 43550 33583805 ~ 33588092 (+) True LOC120561935
TU104277 lncRNA upstream 113127 33515709 ~ 33518515 (+) True G78002
TU104276 lncRNA upstream 137982 33493424 ~ 33493660 (+) True G78001
TU104267 lncRNA upstream 171407 33460022 ~ 33460235 (+) True G77993
TU104334 lncRNA downstream 291280 33922993 ~ 33923230 (+) True G78052
TU104336 lncRNA downstream 306546 33938259 ~ 33938468 (+) True G78054
TU104337 lncRNA downstream 319060 33950773 ~ 33951005 (+) True G78055
TU104416 lncRNA downstream 331081 33962794 ~ 33963092 (+) True G78117
XR_005639657.1 lncRNA downstream 353136 33984849 ~ 33987987 (+) True LOC120561795
XM_039806734.1 mRNA upstream 2697 33605846 ~ 33628945 (+) False nt5c3a
XM_039806731.1 mRNA upstream 2697 33605847 ~ 33628945 (+) False nt5c3a
XM_039806732.1 mRNA upstream 2697 33605909 ~ 33628945 (+) True nt5c3a
XM_039806735.1 mRNA upstream 2697 33615880 ~ 33628945 (+) False nt5c3a
XM_039805280.1 mRNA upstream 65365 33557251 ~ 33566277 (+) True dctn3
XM_039806472.1 mRNA downstream 928 33632641 ~ 33822829 (+) True bbs9
XM_039806473.1 mRNA downstream 928 33632641 ~ 33822829 (+) False bbs9
XM_039806161.1 mRNA downstream 194374 33826087 ~ 33879132 (+) True bmper
XM_039805694.1 mRNA downstream 262647 33894360 ~ 33904285 (+) False LOC120562157
XM_039805693.1 mRNA downstream 262649 33894362 ~ 33904285 (+) True LOC120562157
unassigned_transcript_356 other upstream 532 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_355 other upstream 5640 33625931 ~ 33626002 (+) True trnap-agg_3
TU104140 other upstream 530108 33100413 ~ 33101534 (+) True G77888
XR_005639638.1 other upstream 1210170 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other upstream 1210170 32405133 ~ 32421472 (+) False LOC120561717
TU104301 other downstream 207363 33839076 ~ 33861112 (+) False bmper
TU104327 other downstream 262659 33894372 ~ 33904263 (+) False LOC120562157
TU104420 other downstream 358882 33990595 ~ 34035967 (+) False sh3bp5b
TU104540 other downstream 897642 34529355 ~ 34544379 (+) False G78200
TU104752 other downstream 1207444 34839157 ~ 34856532 (+) False LOC120562567