RNA id: TU109703


Basic Information

Item Value
RNA id TU109703
length 1152
lncRNA type inter_gene
GC content 0.30
exon number 3
gene id G81459
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 1065446 ~ 1066913 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCTCATAATTACGAAATCTTTTCCAAAATTACGAAATCTTTTCTCAAAATTACGAAATCTTTTCTCAAAATTACGAAATCTTTTCCAAAATTACGAGATCTTTTCTCAATATTACGAAATCTTTTCCAAAATTACGAAATCTTTTCTCATAATTACGAGATCTTTTCTCAAAATTACGAAATCTTTTCCAAAATTACGAGATCTTTTCTCAAAATTACGAAATCTTTTCTCAATATTACGAGATCTTTTCTCAAAATTACGAGTACTTTTGAGCTCGTAATTAGAGATGCGtggattacaactttctaggctgaTTCCAATttgcgattttctttgagttaggccagccgataccgatttaaTTTTTTCCAACCACTTTAGGATCTCATAATTACATCTTTTCTCAATATTACGAGATCTTTTTTCATAATTACGAAATCTTTTTTCAATATTACGAAATCTTTTTTCAATATTACGAAATCTTTTCCAATATTACGAGATCTTTTTTCAATATTACGAAATCTTTTCCAATATTACGAGATCTTTTTTCAATATTACGAAATCTTTTCCAATATTACGAGATCTTTTCTCAATATTACGAGTAGTTATTGGCCGGTTCTAGcgttgctctttagatgtgtgtgaatgtcccacaccaggagtaattcatatagttctatttcatagtgatccattatctgttcaacacatgttctattaaagaaaagatagaaaatacatatttgtgtgtgctgtaaagtggttagaaaatctGAAATCGGAATTGGCCTAGAAAATTATGTTATTTTCTCGATATTACGAGATAAGGTGTTCTATGGTGAATTTAATACGCTTCCGTAAAAATGTCCCCCTGTTCACCTTTTGATTTCTGGGTCTGACTGTATTCgaacacaacaacaaattaaTATTCGGTGATCGTTAGTGTATCCAGGAGACTCCTGTGTCGTTGCAttagaaacattttatttatttatttaaaaaaaactctataAATGTATGTTTGTAAAACTTAGGAATCTGCAGCTCTGCACACATCTCTGCttgtatttttacaaaacatttattaataaaAGTCAGTTTTTCTAGATCTACAAAGCGCCAGAATTCAGaacatttgtaaaaaataaaa

Function

GO:

id name namespace
GO:0006082 organic acid metabolic process biological_process
GO:0009069 serine family amino acid metabolic process biological_process
GO:0009070 serine family amino acid biosynthetic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109701 lncRNA downstream 609 1064530 ~ 1064837 (-) True G81457
TU109698 lncRNA downstream 1374 1063118 ~ 1064072 (-) False G81456
TU109700 lncRNA downstream 1374 1063118 ~ 1064072 (-) True G81456
TU109683 lncRNA downstream 32502 1022582 ~ 1032944 (-) True G81446
TU109687 lncRNA downstream 56197 1008882 ~ 1009249 (-) True G81448
TU109710 lncRNA upstream 32872 1099698 ~ 1162667 (-) True G81464
TU109728 lncRNA upstream 51482 1118308 ~ 1120240 (-) True G81476
TU109727 lncRNA upstream 63099 1129925 ~ 1132665 (-) True G81475
TU109750 lncRNA upstream 127049 1193875 ~ 1292564 (-) True G81497
TU109755 lncRNA upstream 169904 1236730 ~ 1237745 (-) True G81499
XM_039809734.1 mRNA downstream 81284 967695 ~ 984162 (-) True LOC120564601
XM_039807903.1 mRNA downstream 130102 866706 ~ 935344 (-) True glsl
XM_039808070.1 mRNA downstream 265722 754068 ~ 799724 (-) True LOC120563709
XM_039808069.1 mRNA downstream 318393 720006 ~ 747053 (-) False LOC120563708
XM_039808066.1 mRNA downstream 546073 488832 ~ 519373 (-) True tbc1d15
XM_039807474.1 mRNA upstream 1963 1068789 ~ 1088673 (-) True LOC120563352
XM_039807797.1 mRNA upstream 85426 1152252 ~ 1177870 (-) True si:ch211-59o9.10
XM_039807811.1 mRNA upstream 114680 1181506 ~ 1194264 (-) True LOC120563572
XM_039808073.1 mRNA upstream 129097 1195923 ~ 1203372 (-) True sycp3
XM_039807821.1 mRNA upstream 137968 1204794 ~ 1235228 (-) True actr6
TU109678 other downstream 19934 1004039 ~ 1045512 (-) False G81445
TU109680 other downstream 19934 1018330 ~ 1045512 (-) False G81445
TU109681 other downstream 19934 1018330 ~ 1045512 (-) False G81445
TU109674 other downstream 19934 1044392 ~ 1045512 (-) True G81445
XR_005640151.1 other downstream 83083 982236 ~ 982363 (-) True LOC120564813
TU109718 other upstream 163014 1229840 ~ 1235216 (-) False actr6
TU109795 other upstream 404002 1470828 ~ 1472927 (-) True G81535
TU109840 other upstream 473138 1539964 ~ 1541474 (-) False kcnj11l
unassigned_transcript_365 other upstream 493192 1560018 ~ 1560089 (-) True trnae-uuc_57
unassigned_transcript_366 other upstream 493828 1560654 ~ 1560725 (-) True trnae-uuc_58

Expression Profile