RNA id: XM_039808077.1


Basic Information

Item Value
RNA id XM_039808077.1
length 4172
RNA type mRNA
GC content 0.64
exon number 17
gene id ambra1b
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 1246936 ~ 1768910 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggctagctagcagctagctagttACGCAGTAGCGGCAGTTTGGCGTCCGGGCAGCTAGTGAATCATCGTACCAATGCCTTAGAAAACATTTCGTCTTCGCCTCCCCTCAGATGATAAGAATGATGTCCATTGATTCCAGTGGATAACATTCATTAGAATAACCGCAAAACACCGATGTCAGACTGTTTTTTGTCGGCCCCGGCCACATTTTCCGTTTTTGGCCGAGCTAGCTAACCAGCTAGCATAGCTGCTAGTTAGCCTGTTAGCAACGCCTATGATGGGGAGCGGATCGATAACGGAAGcctaGACTCTGCATGGCGAAGGACTGGCAGCGGTGGGAGTGAGCAGCCAATCAGCCGAGGACCCCCGGTAGCAGCATGGCGTCCCGTCAGAGGAACTCGGTCCGGATCCTGTCGAGCCGGGAGCGCGGCTCCCAGACCTTTGGCTCCCAgaggctgctgcagctgctggtgGAGGAGAAGGTCCGCTGGATGAAATGGCAGAGTCagGGTGATGACTGTGTGCTGTTCCTGCAGGGCGGCAGCGAGAGTTGGTTCACCGAGAGCAACGTTGCCATCGCCTCCCTGGCCTTCCACCCGAGCGCTCAGCTCCTCCTCATCGCCACCAACAACGAGCTGCACTTCTGGGACTGGAGCCGGCCGGAGCCCTTCGCCGTGGTCAAGACGGGCAGCGACACGGAGAGAGTCCGGTTGGTGAGGTTTGACCCTCTTGGTCACAACCTACTGACGGCCATCGTGAATCCGTCCAATCAGCAGAACGAGGAGGACTCGGAGGTCCCCATGGACAGCGTTGAGATGCCTCACTTCCGCCAGCGCTCCTTCCTGCCTTCGCAGCCGGTTCGCCGCACGCCCATCCTCCACAACTTCCTGCACATCCTGTCGTCTCGGTCGCCGGGAGCTCAGACAGCGGGCGAGCAGGCGCGCCCTCTGGGGGACAACGGGAGCGGTGTAGGAGAATCTCCCAGCATGCCTCTGGCCCAGTACCCGACGTCTGAGCGCGGGCCTCCGTTCCCGGGCTGCACGCAGCACCTGGGCATGGTGTGTCTGTGCAGTCGCTGCTCGGCCAATCGCAACCCTTCGCTGGCCGCCGACGCGACCGTCGCCGATCCCCCGCAGCCCTCGCCGGCGTCCACGTTCTCTTCGGCGCGGACCGAGCCCAGGCAGCCGTCGGAGCGACCCTCGGCCTTTACCTCGGTCTACTACAGCGCCGGAGCTTCTCTAAACGCTGCCGCACCGAGCGGCGCCGAGCCGCACTCCATCTCCAgCCCAGCCTCCAGGCCCGGCCCAGACTGGACCCGTAACCTGCTGAGTATgcgagagggagggggggtcgGCCTGCCCCCCaggacctcctcctcctccatcagcCTGCTGTCGGTCCTCCGCCAGCAGGACGGCTCCTCCCACTCGCCCGTCTACACCTCCGCCTCAGAAGGCCGGGGGTTCGAGCCCGGCGCCCGAGACGCCGCCGCCCGAGACGCCGCCGGCACCAGCAGCGGGCACCACCCGTTCTGGGACGGTTCCCGCGGCAACACTGCGTCCTTCCGCAACGTGCTGCAGTGCAACCTGAGCCGCTACTTCATGGAGTTCGACCGCATGCAGGACCTGGAGCCGCCACTAGGGGCCCAGGAGCCCAGCCCAGAGCTGCTCAACAACAACCAAATGGACCCCGAGCGAGCCGggccttcctcttcttcctccacgTCCTCCCCTACTATCATCCACTACCagccccctctcccccctcctcctcccgtcCCGCACAGCACGCTGGAGAACAACCCGCCCCCCCCGCAGGCGTCCCGCGGTCATCTGAACCGCTGCCGAGCGTGCCACAACCTGCTGACCTTCAACCACGACTCTCAGCGCTGGGAGCGAACCAGCCAGACCTCCTCTGTGTCCGCCTCTCCTCTGGagccctcctcttcctcttcccacTCCTTCCCTGCTTCGTCTGCGTCGCCGTGGCAACCCGAGGACGGCGGTAGGACGCCGGAAGCGGCGCCGCCTCAGCCCGAGCCCAGCGAGCAGCCGCCTGCCCCCGGGGCCTTCCCCATGGCCCCCTCCCCCAGCCACCAGCCCGGCGAGCAGACGGTCGGCCTGGTGTACAACCAGGACACGGCGCAGTGGGAGCGGGTGTACCGGCAGGCGGCGGCGCCCGGCAGATCGGCAGAGCCACCGGAGGCCTTAAGCCAAGAAATGCCTGTTGACCCCCCAGACGAGGACTCCCTGCGCAGGCGACTGCTGGAATCCTCTCTGTTATCGCTGTCTCGCTATGACATGTCAGGATCCAGAGACCACCCCATCTACCCCGATCCAGCCAGGCTTTCTCCAGCCGCGTACTACGCCCAGAGGATGATCCAGTATCTGTCGCGGCGGGACAGCATTCGCCAGCGCTCGCTCCGCTATCAGCAGAACCGCCTGCGGGCCATGTCGTCTTCATCGGACAGCCCCGCCAGCAACCCGTCCAGCTCCATGGACAACAGCGATGTGGACTTTGAAGAGCTGGATGATACTGGAGACAGAGCGAGGCACAGGACTCCACGTAACGCCAGGATGTCTGCGCCCTCGCTCGGCCGCTTCGTCCCACGACGGTTCCTCCTCCCGGAGTACCTGCCCTACGCCGGGATCTTCCACGAACGAGGGCAGCCCGGCCTCGCCACACACTCCTCCGTCAACAGAGTGCtcgctGGGGCATCGATCGGGGACGGCCAGTCTGCGGTCGCCAGCAACATCGCTAACACCACGTACCGTCTGCAGTGGTGGGACTTCACCAAGTTTGACCTTCCGGAGATCAGCAACGCCTCCGTCAACGTCCTGGTGCCAAACTGTAAAATCTACAACGACGCCAGTTGTGACATCTCTGCAGACGGTCAGCTGTTGGCCGTCTTCATTCCCAGCAGCCAGCGGGGTTTTCCAGACGAGGGCATCCTGGCCATCTACTCTCTGGCTCCCCACAACCTGGGAGAGATGCTCTACACCAAGAGATTCGGTCCGAATGCTATCTCCGTTAGCTTGTCTCCAATGGGCTGCTACGTGATGGTCGGCCTGGCCTCCCGCAGGATCCTGCTGCATCCCACCACCGACCACATGGTGGCGCAAGTCTTCCGCCTGCAGCAGCCCCACGGAGGAGAGACCTCCATCAGGATGGTGTTTAACGTGGTTTACCCGATGGCTCCAGACCAGCGGCGCCACGTCAGCATTAACTCGGCCCGCTGGCTGCCGGATCCGGGGATGGGTCTGGCGTACGGAACCAACAAGGGAGACCTGGTCATCTGCCGGCCTGTgttctACCGAAGCGACGGTGAGAGTCCAGCCGAGTCGAGCAGCGAGCCGTTGTTCTCCGTTAACAACAGTGGAACCAGCCGGACTCGAGGTTCTGACAGACCGGGTCCAAATCGATCTGGCTGGAGACTGGACAGAGACATGGGTCTGATGAACGCGATTGGTCTTCAGCCCCGACATCCCGCCCCCTCGGTGACATCACAGGGAACCCAGACGCCAATCATCCAGCTGCAGAACGCCGAGACGCAAACGGAGAGGGAGCTGCCGGAGCCCAGCGCTCCGCAGGCCCCAAGAGGAGAGTCTGCGGGGGAGTCGGTCTCGGGGGAGGACGCCCTGGCTCGTATCCGGCGTCTGATTGCCGAAGGCGGCATGACGGCGGTGGTCCAGCGGGAGCAGAGCACCACGATGGCGTCCATGGGCGGCTTCGGGAACAACATCATCGTGAGCCACCGCATCCACCGCGGCTCGCAGACCGCCGCCGGGGCGTCCCGTTCGCCGCCGGcggaccctcctcctcctcctcctcggcgcCCCTCCTCATCCCGCAGACGTCCAACCCGGCCGAGCAGCTCGCCATGTGGGGCCCGCGGGCGCCGCCGGGGCTCTCGCTCGCCGTGGACATGGACGACGTGTTTGACGGCGTGCGAACGGACGACGACGAAGACTCCTCTTCTCCGCCaggcccctcctcttcctccatgcTGCTGtcgtcctcttcctcccctctccgcctctccttttcttttcaagcCCCCGGGTTTTATCGTATTGGTGGGGCAGGCGTCTCCAACGGTTACCCCGGCGACCTGTACAGCAGGTAGTTCACCTTTTTGGGGCCAGGAGAAGCCGAGCGTTTCAGCGAAATAA

Function

GO: NA

KEGG:

id description
K17985 AMBRA1; activating molecule in BECN1-regulated autophagy protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109869 lncRNA downstream 7761 1708041 ~ 1717246 (-) True G81592
TU109853 lncRNA downstream 8416 1640720 ~ 1716591 (-) True G81581
TU109862 lncRNA downstream 42026 1680821 ~ 1682981 (-) True G81586
TU109851 lncRNA downstream 83813 1640631 ~ 1641194 (-) True G81580
TU109814 lncRNA downstream 108202 1516716 ~ 1616805 (-) False G81550
TU109891 lncRNA upstream 93589 1862499 ~ 1862980 (-) True G81609
TU109925 lncRNA upstream 166077 1934987 ~ 1935976 (-) False G81627
TU109926 lncRNA upstream 166077 1934987 ~ 1935976 (-) False G81627
TU109927 lncRNA upstream 166077 1934987 ~ 1935976 (-) True G81627
TU109947 lncRNA upstream 270699 2039609 ~ 2040563 (-) True G81643
XM_039807756.1 mRNA downstream 21593 1691369 ~ 1703414 (-) True chrm4b
XM_039807755.1 mRNA downstream 21595 1691369 ~ 1703412 (-) False chrm4b
XM_039807753.1 mRNA downstream 22756 1691369 ~ 1702251 (-) False chrm4b
XM_039807754.1 mRNA downstream 23548 1691369 ~ 1701459 (-) False chrm4b
XM_039807757.1 mRNA downstream 23549 1691369 ~ 1701458 (-) False chrm4b
XM_039809167.1 mRNA upstream 20640 1789550 ~ 1859958 (-) True nox5
XM_039809169.1 mRNA upstream 22720 1791630 ~ 1794752 (-) True LOC120564319
XM_039809170.1 mRNA upstream 48001 1816911 ~ 1820520 (-) True LOC120564320
XM_039809171.1 mRNA upstream 55180 1824090 ~ 1826931 (-) True LOC120564321
XM_039809879.1 mRNA upstream 96758 1865668 ~ 1905302 (-) True rpgrip1l
TU109845 other downstream 60115 1613394 ~ 1664892 (-) True G81576
unassigned_transcript_366 other downstream 164282 1560654 ~ 1560725 (-) True trnae-uuc_58
unassigned_transcript_365 other downstream 164918 1560018 ~ 1560089 (-) True trnae-uuc_57
TU109840 other downstream 183533 1539964 ~ 1541474 (-) False kcnj11l
TU109795 other downstream 252080 1470828 ~ 1472927 (-) True G81535
TU109967 other upstream 341711 2110621 ~ 2112849 (-) True G81655
unassigned_transcript_368 other upstream 675849 2444759 ~ 2444830 (-) True trnak-uuu_14
unassigned_transcript_369 other upstream 748452 2517362 ~ 2517433 (-) True trnae-uuc_60
unassigned_transcript_370 other upstream 762262 2531172 ~ 2531243 (-) True trnak-uuu_15
TU110061 other upstream 901405 2670315 ~ 2678513 (-) False G81726

Expression Profile