RNA id: TU109853


Basic Information

Item Value
RNA id TU109853
length 535
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G81581
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 1640720 ~ 1716591 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttaagtaacactaacaacttagtgtgttttattatattagattacaattaggataagaggttaatatcagatgtatccttcatagagaaagataTCAGATCTGaatgcttttcttttgtttttagtgGGGTGGGGGTTTGAGGAACATGggggcccatcaggactgcctatGCAGTTACGCCCctgcgcacagacacacacacggacacagacacacacatacatgcagagacacacacacggacatacacacagacacacacagatacatgcaCACCGACACGCAGAGAAAAGCACACGCAACagacccagagacacacacacactcagacagacacacacacacacacacacacacacacacacacacacacagacacacacacagagacagacacacacacacacacacacacacacacacacacacacagacacacacacacacagagacacacacacacacagacacacagacacacagtgacacacacacacacacacacacagagacacacagagacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109814 lncRNA downstream 23915 1516716 ~ 1616805 (-) False G81550
TU109748 lncRNA downstream 31896 1470346 ~ 1608824 (-) True G81495
TU109837 lncRNA downstream 71265 1535338 ~ 1569455 (-) True G81569
TU109794 lncRNA downstream 73763 1470698 ~ 1566957 (-) True G81534
TU109793 lncRNA downstream 73763 1562269 ~ 1566957 (-) False G81534
TU109891 lncRNA upstream 145908 1862499 ~ 1862980 (-) True G81609
TU109925 lncRNA upstream 218396 1934987 ~ 1935976 (-) False G81627
TU109926 lncRNA upstream 218396 1934987 ~ 1935976 (-) False G81627
TU109927 lncRNA upstream 218396 1934987 ~ 1935976 (-) True G81627
TU109947 lncRNA upstream 323018 2039609 ~ 2040563 (-) True G81643
XM_039807814.1 mRNA downstream 92536 1538139 ~ 1548184 (-) True kcnj11l
XM_039807800.1 mRNA downstream 188440 1443627 ~ 1452280 (-) True LOC120563569
XM_039807820.1 mRNA downstream 266340 1349055 ~ 1374380 (-) True LOC120563578
XM_039807817.1 mRNA downstream 376666 1249797 ~ 1264054 (-) True zgc:101783
XM_039807821.1 mRNA downstream 405492 1204794 ~ 1235228 (-) True actr6
XM_039808077.1 mRNA upstream 8416 1725007 ~ 1768910 (-) True ambra1b
XM_039809167.1 mRNA upstream 72959 1789550 ~ 1859958 (-) True nox5
XM_039809169.1 mRNA upstream 75039 1791630 ~ 1794752 (-) True LOC120564319
XM_039809170.1 mRNA upstream 100320 1816911 ~ 1820520 (-) True LOC120564320
XM_039809171.1 mRNA upstream 107499 1824090 ~ 1826931 (-) True LOC120564321
unassigned_transcript_366 other downstream 79995 1560654 ~ 1560725 (-) True trnae-uuc_58
unassigned_transcript_365 other downstream 80631 1560018 ~ 1560089 (-) True trnae-uuc_57
TU109840 other downstream 99246 1539964 ~ 1541474 (-) False kcnj11l
TU109795 other downstream 167793 1470828 ~ 1472927 (-) True G81535
TU109718 other downstream 405504 1229840 ~ 1235216 (-) False actr6
TU109743 other upstream 8561 1725152 ~ 1727741 (-) False ambra1b
TU109967 other upstream 394030 2110621 ~ 2112849 (-) True G81655
unassigned_transcript_368 other upstream 728168 2444759 ~ 2444830 (-) True trnak-uuu_14
unassigned_transcript_369 other upstream 800771 2517362 ~ 2517433 (-) True trnae-uuc_60
unassigned_transcript_370 other upstream 814581 2531172 ~ 2531243 (-) True trnak-uuu_15

Expression Profile