RNA id: TU110046


Basic Information

Item Value
RNA id TU110046
length 516
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G81718
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 2575570 ~ 2576163 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tacatagttgatttctcgcataaaaaagtttcagaagtgaattttgtaatggaatagcagagatctgcgtgacctagctagattcagaagactacctgatctcaggtcagttgtgtagcctatgtaaatgttctacctgatctcaggtcagttgtgtagcctatgtaaatgtactacctgatctcaggtcagttgtgtagcctatgtaaatgttctacctgatctcaggtcagttgtgtagcctatgtaaatgtactacctgatctcaggtcagttgtgtagtatgtaaatgtactacctgatctcaggtcagttgtgtagtatgtaaatgttggggcgtgactgttctcttaaggttccagattttgagacgcttgcgtaagcaactcagctttgttgggattcgcccgttttcagcggcagtttcaaaatatgagattttcatagtaaaggggtgtcagtgggatttagagcttctatgtatgtcctatttacccaccgaactgtcgttattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110044 lncRNA downstream 25690 2548959 ~ 2549880 (-) True G81717
TU110042 lncRNA downstream 32703 2542514 ~ 2542867 (-) True G81716
TU110043 lncRNA downstream 32703 2542514 ~ 2542867 (-) False G81716
TU110025 lncRNA downstream 233015 2340405 ~ 2342555 (-) True G81700
TU110016 lncRNA downstream 277769 2296820 ~ 2297801 (-) False G81695
TU110052 lncRNA upstream 7539 2583702 ~ 2591676 (-) True G81721
TU110064 lncRNA upstream 68880 2645043 ~ 2675524 (-) True G81729
TU110063 lncRNA upstream 71131 2647294 ~ 2654688 (-) True G81728
TU110068 lncRNA upstream 76941 2653104 ~ 2653678 (-) True G81732
TU110062 lncRNA upstream 95544 2671707 ~ 2676130 (-) True G81727
XM_039807620.1 mRNA downstream 208280 2366330 ~ 2367290 (-) True LOC120563454
XM_039807617.1 mRNA downstream 217482 2357170 ~ 2358088 (-) True LOC120563451
XM_039807619.1 mRNA downstream 243091 2330224 ~ 2332479 (-) True LOC120563453
XM_039807622.1 mRNA downstream 261303 2289532 ~ 2314267 (-) False LOC120563455
XM_039808535.1 mRNA upstream 132353 2708516 ~ 2723969 (-) True mphosph6
XM_039808116.1 mRNA upstream 176143 2752306 ~ 2819413 (-) True LOC120563733
XM_039808921.1 mRNA upstream 481421 3057584 ~ 3067921 (-) True fem1b
XM_039809713.1 mRNA upstream 530927 3107090 ~ 3108199 (-) True LOC120564583
XM_039809710.1 mRNA upstream 536143 3112306 ~ 3130047 (-) False LOC120564581
unassigned_transcript_370 other downstream 44327 2531172 ~ 2531243 (-) True trnak-uuu_15
unassigned_transcript_369 other downstream 58137 2517362 ~ 2517433 (-) True trnae-uuc_60
unassigned_transcript_368 other downstream 130740 2444759 ~ 2444830 (-) True trnak-uuu_14
TU109967 other downstream 462721 2110621 ~ 2112849 (-) True G81655
TU109743 other downstream 847829 1725152 ~ 1727741 (-) False ambra1b
TU110061 other upstream 94152 2670315 ~ 2678513 (-) False G81726
TU110074 other upstream 108735 2684898 ~ 2685240 (-) True G81738
TU110247 other upstream 361589 2937752 ~ 2937990 (-) True G81832
TU110610 other upstream 803864 3380027 ~ 3380528 (-) True G82122
TU110644 other upstream 918228 3494391 ~ 3578384 (-) True G82147

Expression Profile