RNA id: TU110247


Basic Information

Item Value
RNA id TU110247
length 239
RNA type TUCP
GC content 0.60
exon number 1
gene id G81832
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 2937752 ~ 2937990 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtccttctccatgtcttctccaaacttctcccacacccgctgctttgcctctttcacggcagaggctgcagcccttcgggcccttcggtaccctgcaactgcctccggagtcctccgggataacatatcccggaaagactccttcttcagtcggacggcttccctgaccaccggtgtccaccacggtgttcgtgggttaccgccccttgaggcacctaagaccctaagaccacagctcc

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0019538 protein metabolic process biological_process
GO:0007281 germ cell development biological_process
GO:0006508 proteolysis biological_process
GO:0003006 developmental process involved in reproduction biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110226 lncRNA downstream 89778 2847604 ~ 2847974 (-) True G81814
TU110227 lncRNA downstream 89778 2847604 ~ 2847974 (-) False G81814
TU110222 lncRNA downstream 94471 2842329 ~ 2843281 (-) True G81812
TU110156 lncRNA downstream 101662 2771141 ~ 2836090 (-) True G81782
TU110157 lncRNA downstream 101662 2835578 ~ 2836090 (-) False G81782
TU110251 lncRNA upstream 23405 2961395 ~ 2961649 (-) True G81836
TU110293 lncRNA upstream 88518 3026508 ~ 3054359 (-) True G81874
TU110302 lncRNA upstream 116549 3054539 ~ 3055579 (-) True G81882
TU110304 lncRNA upstream 118549 3056539 ~ 3058868 (-) False fem1b
TU110303 lncRNA upstream 119165 3057155 ~ 3058910 (-) False fem1b
XM_039808116.1 mRNA downstream 118339 2752306 ~ 2819413 (-) True LOC120563733
XM_039808535.1 mRNA downstream 213783 2708516 ~ 2723969 (-) True mphosph6
XM_039807620.1 mRNA downstream 570462 2366330 ~ 2367290 (-) True LOC120563454
XM_039807617.1 mRNA downstream 579664 2357170 ~ 2358088 (-) True LOC120563451
XM_039807619.1 mRNA downstream 605273 2330224 ~ 2332479 (-) True LOC120563453
XM_039808921.1 mRNA upstream 119594 3057584 ~ 3067921 (-) True fem1b
XM_039809713.1 mRNA upstream 169100 3107090 ~ 3108199 (-) True LOC120564583
XM_039809710.1 mRNA upstream 174316 3112306 ~ 3130047 (-) False LOC120564581
XM_039809712.1 mRNA upstream 179862 3117852 ~ 3122591 (-) True LOC120564582
XM_039809711.1 mRNA upstream 187734 3125724 ~ 3130047 (-) True LOC120564581
TU110074 other downstream 252512 2684898 ~ 2685240 (-) True G81738
TU110061 other downstream 259239 2670315 ~ 2678513 (-) False G81726
unassigned_transcript_370 other downstream 406509 2531172 ~ 2531243 (-) True trnak-uuu_15
unassigned_transcript_369 other downstream 420319 2517362 ~ 2517433 (-) True trnae-uuc_60
unassigned_transcript_368 other downstream 492922 2444759 ~ 2444830 (-) True trnak-uuu_14
TU110610 other upstream 442037 3380027 ~ 3380528 (-) True G82122
TU110644 other upstream 556401 3494391 ~ 3578384 (-) True G82147
TU110810 other upstream 1338830 4276820 ~ 4278359 (-) True G82246
TU111250 other upstream 2066402 5004392 ~ 5011875 (-) True urahb
TU111339 other upstream 2542758 5480748 ~ 5483491 (-) False faap24

Expression Profile