RNA id: TU110723


Basic Information

Item Value
RNA id TU110723
length 1868
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G82200
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 3908590 ~ 3910617 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtataacagctgtatactactatccctgtatggatgtgatatgatgtataacagctgtatactactatccctgtatggatgtgatatgatttctatctctgttgtcggtctggctcaggttaaactctttgtgaaacatgaacaaacaatgaatgccccagaactttcttttattctccagttttttcatcagttataacggaaaaaaatttcttcagggctttattacgtggtatcggatcggtgcataagcTCCAttacttcccgataccagcgttttaggcagtatcgcaGCAGATGCGTatcggtatcggaccatctctatcaaataccgaatcctactcccatcctcagttcGGTGTAGGTAACGGTCGTCTGGTTAACATCAGTTTTTAGCCGtcactgtccttcctttgccgtacctgaagttgctgcattctggctgctgtctgcagattccttcatgcacaactcgtattctttcagatgtttcagaccagatgttgtaacagcggccatgttgtgtatagtttagggtcctcgccaccaccagaccaatcagcagtgaacagattgaacatgtagctggacttgaatggccttcttttgactgaaagtaccaggatgaccccctatggtcttcttttgactgaaagtactgccaaacaactttttctgctcaccaaatccatgtccactttctcacagcctactgctcaccagatccatgtccactttctcacagcctactgctcaccagatccatgtccacttcctcacagcctactgctcaccagatccatgtccactttctcacagcctactgctcacctgatccatgtccactttctcacagcctactgctcaccagatccatgtccacttcctcacagcctactgcattgaaccagttccatgtccacttcctcacagcctactgcattgaaccagatccatgtccactttctcacagcctactgcattgaaccagttccatgtccacttcctcacagcctactgcattgaaccagatccatgtccacttcctcacagtctactgcattgaaccagttccatgtccacttcctcacagcctactgcattgaaccagatccatgtccactttctcacagcctactgcattgaaccagatccatgtccactttctcacagcctactgcattgaaccagttccatgtccacttcctcacagtctactgcattgaaccagttccatgtccacttcctcacagcctactgcattgaaccagatccatgtccacttcctcacagtctactgcattgaaccagttccatgtccacttcctcacagcctactgcattgaaccagatccatgtccactttctcacagcctactgcattgaaccagttccatgtccactttctcacaccctactgcattgaacgctccacctacgtaaacaccttcccgtcaTCAGCGGCGCCGTCGTTatggcgaccagcgtagcgcaccgagtgcaagcgtagggttcggttcggtggaaaaaaattctaaggttcggcagaaacccaacccccgtcaaaaagcccaatattcagccgaatccgaagctgaatcctggattcggtgcatcccttcGTAGAACACGACAAAAAGGGCTGATTTTAACTTTTAACGTAATCAGATCAATCAGTGACGTCGTTACAGAGACTAGAAGGAAATCCTGATGTTATTTATTGGCCGTTTAATTATTAAGAAATCTATTTTTGATACTCTGGATCTGAtccggtttaaaaaaaaaacaaccttaaaaGCCCATCAGCTGATCATTTAATAGGCTGGTTTTACTCAGTTTTACCGTTTACATTACCGCTGTTCAACCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110725 lncRNA downstream 18316 3856326 ~ 3890274 (-) True G82202
TU110717 lncRNA downstream 56655 3849670 ~ 3851935 (-) True G82198
TU110718 lncRNA downstream 56655 3849670 ~ 3851935 (-) False G82198
TU110712 lncRNA downstream 90974 3817168 ~ 3817616 (-) True G82194
TU110703 lncRNA downstream 114358 3788002 ~ 3794232 (-) True G82189
TU110732 lncRNA upstream 3145 3913762 ~ 3914359 (-) True G82207
TU110761 lncRNA upstream 40054 3950671 ~ 3950932 (-) True G82211
TU110763 lncRNA upstream 62569 3973186 ~ 3973638 (-) True G82213
TU110755 lncRNA upstream 69388 3980005 ~ 4008429 (-) False G82210
TU110757 lncRNA upstream 69388 3980005 ~ 3981549 (-) True G82210
XM_039809804.1 mRNA downstream 82999 3799577 ~ 3825591 (-) True lrrn3a
XM_039807410.1 mRNA downstream 277775 3610411 ~ 3630815 (-) True znf277
XM_039808300.1 mRNA downstream 472285 3422286 ~ 3436305 (-) True ciao2a
XM_039809801.1 mRNA downstream 735433 3170771 ~ 3173157 (-) True rxfp3.3b
XM_039809711.1 mRNA downstream 778543 3125724 ~ 3130047 (-) True LOC120564581
XM_039808856.1 mRNA upstream 427 3911044 ~ 3969786 (-) True LOC120564132
XM_039808859.1 mRNA upstream 71093 3981710 ~ 4010282 (-) True dus2
XM_039807492.1 mRNA upstream 108477 4019094 ~ 4060242 (-) True slc7a10b
XM_039809093.1 mRNA upstream 178067 4088684 ~ 4097476 (-) True LOC120564247
XM_039809099.1 mRNA upstream 215010 4125627 ~ 4127757 (-) True LOC120564250
TU110644 other downstream 330206 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 528062 3380027 ~ 3380528 (-) True G82122
TU110247 other downstream 970600 2937752 ~ 2937990 (-) True G81832
TU110074 other downstream 1223350 2684898 ~ 2685240 (-) True G81738
TU110061 other downstream 1230077 2670315 ~ 2678513 (-) False G81726
TU110810 other upstream 366203 4276820 ~ 4278359 (-) True G82246
TU111250 other upstream 1093775 5004392 ~ 5011875 (-) True urahb
TU111339 other upstream 1570131 5480748 ~ 5483491 (-) False faap24
TU111877 other upstream 3377278 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 4664637 8575254 ~ 8575431 (-) True LOC120564825

Expression Profile