RNA id: TU110793


Basic Information

Item Value
RNA id TU110793
length 1749
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G82234
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 4111480 ~ 4138966 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAACTTAAAACAAGTTTAATCAATGAATAAATGGAATACCAAAAAGGCACACTGGCTAGAAATCAAAATAGAGACAAAGAGAAACAGAATTACAATGATTGTGTAGCTTCATTAGAGCTGAAAAAGCTTTGTTTAGAGTCTGTTTCTGCCTTAAATCTGACTGTTTTTTAGCTGATCAGTGTTGAACCAAGTCTTGCTTTCCGAACTTCACAATCCTGCCGGAGAAGAAGTTGTCTCAGCGAGCATCTCTGCAGCTtcatttctttctgctgctctcaCCAACACACTTGTGACTTTTGACATGACTGAGCTGAGAGAATCTTCTATCACAAACTGAACAACTAAATGGTTTCTCCCccgtgtggattctcatgtgtctcGTCAAATTGCTTTTGCTACTGAAACTTGTTTTACAAACTGAGCAGTTAAAAATGTTCCCTTCTGAATGAAGTTTCATGTGGTTCGTTAAGGCCttcttaagaaaGAATCTTTTACCACAAACTGAACAACTAAATGGTCTCTCCCCCGTGTGGACAGCCAAGTGTCGTCTTAGATGGGTTTGCTGTGTAAATGTTTTATCACAAACTGAACAACTAAATGGTTTTTCCCccgtgtggattctcatgtgtttaACCAAATAGCTGCGCTGACCAAAAATTGCTTTACAAACCGAGCAGGTTAAACATTTCCCTTCTGAATGAAGTTTCATGTGGTTTGTTAAAGTCTTCTTAAGAGAGAATCTTTTATCGCAAACTGAACAACTAAATGGTTTCTTCTTTGCGTGGACAGCCAAGTGTCGTTTCACATCTGACTTTCGTTTAAATCTTTTATCACAAACTGAACAACTAAAAGATTTCTCCCCTGTGTGGACAACCAGATGTCGTTTCAGATTGCTAGGgtctgcaaatgtttttttacaaaCTGAACAACTTAATGGTTTTtcacctgtgtggattctcatgtgtacAACTAAATTGCTAGGCTTAAAGAAACTTGCTTTACAAACTGAGCAGGTTGAACTATTTTCTTCTGAGTGAAGTTTCATGTGACTGGTTAAGGTTTTCTTCAGAGGGAATCTTTTACCACAAACTGAGCAACTAAATGGTTTCACTCCTGTTTGGACTCCAGAGGGTTTCTGCAGATGTTTTTTGCGGCCAACGCTTCCAGCACATTCAGAGGAGCTAACTGATGTGTTTCCAGTATTACATTCCACATCACTTACAGCTACTTCATTATTTTGCAAAGGGTTTAAACCTGACTGAGGTTCCCTAGTCTCCTCCAAATCACCGCTGGCATCAGTCTGAGATTCAGAGGAGTCTGAAGTCTTGTCATGAGTAGCTGGTTGTAAAGGACTATCTGGATCTGAGTTcttggctggttctggtcctccacagtcctctccatcaacttctgctctctctgcctctctgttctCCTCAGTTTGGCTTtcatgaagctgtgaggactgagctttctcttcatcatcttcgtcactcttcacagggacaggagtgaacgGGAActtgatatcagcctcctccagctcttgaagctgctctccctcctgactggtcctgagttcctcctgttcctctttaatgtatGGGGGGGGCTCTGGGTCCTTCTGGTCCAGACTGGAGctccactcctgctgctcagggggaacctctgCTTTAACCACcgacagctgctggacatctGAGGAGAAAAAGGAAATACATGCACACGGAGAAAATTGTTAGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110781 lncRNA downstream 54181 4056974 ~ 4057299 (-) True G82229
TU110777 lncRNA downstream 68625 4033244 ~ 4042855 (-) True G82225
TU110770 lncRNA downstream 111843 3997225 ~ 3999637 (-) False G82220
TU110771 lncRNA downstream 111843 3997380 ~ 3999637 (-) True G82220
TU110757 lncRNA downstream 129931 3980005 ~ 3981549 (-) True G82210
TU110784 lncRNA upstream 11313 4150279 ~ 4152067 (-) True G82232
XR_005640083.1 lncRNA upstream 51089 4190055 ~ 4191181 (-) True LOC120564271
TU110790 lncRNA upstream 61681 4200647 ~ 4216400 (-) False G82233
TU110791 lncRNA upstream 61681 4200647 ~ 4229086 (-) False G82233
TU110857 lncRNA upstream 123169 4262135 ~ 4316293 (-) True G82280
XM_039809093.1 mRNA downstream 14004 4088684 ~ 4097476 (-) True LOC120564247
XM_039807492.1 mRNA downstream 51238 4019094 ~ 4060242 (-) True slc7a10b
XM_039808859.1 mRNA downstream 101198 3981710 ~ 4010282 (-) True dus2
XM_039808856.1 mRNA downstream 141694 3911044 ~ 3969786 (-) True LOC120564132
XM_039809804.1 mRNA downstream 285889 3799577 ~ 3825591 (-) True lrrn3a
XM_039809080.1 mRNA upstream 479360 4618326 ~ 4629983 (-) False prr33
XM_039809079.1 mRNA upstream 479360 4618326 ~ 4629983 (-) False prr33
XM_039809077.1 mRNA upstream 479361 4618327 ~ 4629983 (-) False prr33
XM_039809078.1 mRNA upstream 479361 4618327 ~ 4629839 (-) True prr33
XM_039809113.1 mRNA upstream 529516 4668482 ~ 4677370 (-) True LOC120564256
TU110644 other downstream 533096 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 730952 3380027 ~ 3380528 (-) True G82122
TU110247 other downstream 1173490 2937752 ~ 2937990 (-) True G81832
TU110074 other downstream 1426240 2684898 ~ 2685240 (-) True G81738
TU110061 other downstream 1432967 2670315 ~ 2678513 (-) False G81726
TU110810 other upstream 137854 4276820 ~ 4278359 (-) True G82246
TU111250 other upstream 865426 5004392 ~ 5011875 (-) True urahb
TU111339 other upstream 1341782 5480748 ~ 5483491 (-) False faap24
TU111877 other upstream 3148929 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 4436288 8575254 ~ 8575431 (-) True LOC120564825

Expression Profile