RNA id: TU111303


Basic Information

Item Value
RNA id TU111303
length 1118
lncRNA type read_through
GC content 0.33
exon number 2
gene id G82616
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 5210749 ~ 5626247 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTAATTATatagtttctattttttattatattcttattttatatttcatttgtACTTTTTTCTGTTCATCTATGCTTATTTCTGTCTTCCCCAATTTACACACTGTGGTTCAacaaaggcttatcttatcaaCACTGCCAACATTTTTATGTTAAATGTTGTTGAAGCTtcttcagttgaaaaaaaacctgATAAACATACAACTAGTCTCAATGCCAGCTTTATTATTGGTTATTTGAGTGTGAATTAAATAAGGCACATTCACCATTTTTAAACCATCcaaacatgaaaataaataaaaaaaaaaaaagaatacaaaaataattagGACCTCTGATTGGGGTTTGACATCTTTCCATCTTAAATAAGACACTGAAAGGTTACAAAGACGCTGCTTTGCTGGAGACTCAGTGAAtatttccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctcaaaTACAGTAGACACATCGAAGGAGAGTGGAAACAAAACGGACGGTCGACCGTGAAAACACTGACCCACAGTTTTAGGGCTGAAGGTATCGCCAATGATTTCCCGAATCGATTCGATTGCATTTCCGATTCAATATCAGTTAGGTAACAGGACAATTTTTAGTCATAAAGCTAATTTTGCTTAGATATTAAAGATTCTCAGATATcttctgctgtaaattgtacaagcaaaAAGCAACCCTTGAATGTCTTTATAATGATGTCTACAATAAGAATTGACCCCCAAAAAAAGTTAGTTTAAAAGAACTTTTTGCTAATACATCCATTGTGAAAATGcaagtattaaaaaaatagatttcTAGATTTTATTAATCAAAATCGGATCacgttagggctgcacgatattaggaaaatatctaattgcgattattttgactgatattgcgattgcgaaattattcacgatattggagggaatggtCGTTTTTGTATCACTCATTTTcactgaaaaatataaaaaattaaaatatgaagtgtgatttttttgcgaggatctgtaccaaacaaagatgttttctgtagtctgtaggatacgattggtaggccgggacgtctccacagcaccacaatacttcattttagaacagtttgacacatat

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111294 lncRNA downstream 59537 5150981 ~ 5151212 (-) True G82609
TU111292 lncRNA downstream 65097 5145412 ~ 5145652 (-) True G82607
TU111288 lncRNA downstream 72432 5137436 ~ 5138317 (-) True G82603
TU111285 lncRNA downstream 78532 5131196 ~ 5132217 (-) True G82600
TU111284 lncRNA downstream 79652 5130775 ~ 5131097 (-) True G82599
TU111394 lncRNA upstream 15550 5641797 ~ 5644736 (-) True G82687
TU111397 lncRNA upstream 28767 5655014 ~ 5676400 (-) False G82689
TU111406 lncRNA upstream 53938 5680185 ~ 5691020 (-) True G82689
TU111477 lncRNA upstream 157224 5783471 ~ 5829244 (-) True G82749
TU111479 lncRNA upstream 165979 5792226 ~ 5829326 (-) True G82750
XM_039809126.1 mRNA downstream 198808 5005362 ~ 5011941 (-) False urahb
XM_039809127.1 mRNA downstream 198837 5005362 ~ 5011912 (-) False urahb
XM_039809085.1 mRNA downstream 206545 4984680 ~ 5004204 (-) True afg3l1
XM_039809100.1 mRNA downstream 285443 4912293 ~ 4925306 (-) True LOC120564251
XM_039809114.1 mRNA downstream 520220 4681350 ~ 4690529 (-) True zgc:172145
XM_039809055.1 mRNA upstream 76412 5702659 ~ 5707653 (-) True LOC120564218
XM_039809056.1 mRNA upstream 86821 5713068 ~ 5716665 (-) True LOC120564220
XM_039809057.1 mRNA upstream 96617 5722864 ~ 5726731 (-) True LOC120564221
XM_039809754.1 mRNA upstream 265586 5891833 ~ 5935799 (-) False aass
XM_039809752.1 mRNA upstream 265586 5891833 ~ 5935799 (-) False aass
TU111250 other downstream 198874 5004392 ~ 5011875 (-) True urahb
TU110810 other downstream 932390 4276820 ~ 4278359 (-) True G82246
TU110644 other downstream 1632365 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 1830221 3380027 ~ 3380528 (-) True G82122
TU110247 other downstream 2272759 2937752 ~ 2937990 (-) True G81832
TU111877 other upstream 1661648 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 2949007 8575254 ~ 8575431 (-) True LOC120564825
XR_005640160.1 other upstream 3883695 9509942 ~ 9510071 (-) True LOC120564823
XR_005640161.1 other upstream 4447046 10073293 ~ 10073422 (-) True LOC120564824
TU112643 other upstream 4460117 10086364 ~ 10088600 (-) False pik3c2a

Expression Profile