RNA id: TU111781



Basic Information


Item Value
RNA id TU111781
length 556
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G82983
representative True

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 7116653 ~ 7117208 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGTTAGgtttaaaaataagttaaagcattggtgatgtctgataaaaatgtacttttggttGAATGAACACTGTAGCTGGAGGAAGCACCGAATCTACCGATTTCATCACACCatactaatcagcatttgactgcctcacccaaaagctagcttctaaagaattaattaggtcatggctgttatttagcatactgtaggagactcattgtccccacaggaaaggtaactgctagacgtgattagaacaaaggaaatgcaaactctgtaaacttgaatacaatcaacacttccatgataatcaaccttagtctgtgacctggagtaaacctaaattcaggtgtgtccttatcctgaggGACAGGATAAATGGGGGCTCCTGAGACGATCTCAGGACTGTTCTTCTGTGACTCCACAAGAGAAGCATGAGagcagtccgctgtcagctgcagtgtaacatttgtgttttcatgttttatgtttaattgtgtcttgactgtcgttttcatgttgtttttattaaaccatcttgcttaatctttcaaatCCGAACCTAGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111772 lncRNA downstream 40647 7075778 ~ 7076006 (-) True G82975
TU111768 lncRNA downstream 71790 7044477 ~ 7044863 (-) True G82972
TU111769 lncRNA downstream 71790 7044477 ~ 7044863 (-) False G82972
TU111729 lncRNA downstream 273567 6841643 ~ 6843086 (-) True G82941
TU111714 lncRNA downstream 310121 6797975 ~ 6806532 (-) True G82930
TU111813 lncRNA upstream 56814 7174022 ~ 7182239 (-) True LOC120563994
TU111820 lncRNA upstream 88164 7205372 ~ 7205629 (-) True G83020
TU111858 lncRNA upstream 118997 7236205 ~ 7236619 (-) True G83049
TU111861 lncRNA upstream 121712 7238920 ~ 7239343 (-) True G83052
TU111863 lncRNA upstream 124750 7241958 ~ 7242661 (-) True G83053
XM_039807525.1 mRNA downstream 15058 7096521 ~ 7101595 (-) True LOC120563388
XM_039810072.1 mRNA downstream 86031 6968924 ~ 7030622 (-) False LOC120564807
XM_039810073.1 mRNA downstream 86031 6968924 ~ 7030622 (-) True LOC120564807
XM_039810074.1 mRNA downstream 86031 6995031 ~ 7030622 (-) False LOC120564807
XM_039809793.1 mRNA downstream 288332 6826664 ~ 6828321 (-) True LOC120564637
XM_039808557.1 mRNA upstream 58551 7175759 ~ 7197808 (-) False LOC120563994
XM_039808558.1 mRNA upstream 58551 7175759 ~ 7197806 (-) False LOC120563994
XM_039807420.1 mRNA upstream 119513 7236721 ~ 7254912 (-) True deaf1
XM_039807421.1 mRNA upstream 119513 7236721 ~ 7254479 (-) False deaf1
XM_039809052.1 mRNA upstream 212273 7329481 ~ 7330643 (-) True LOC120564216
TU111339 other downstream 1633162 5480748 ~ 5483491 (-) False faap24
TU111250 other downstream 2104778 5004392 ~ 5011875 (-) True urahb
TU110810 other downstream 2838294 4276820 ~ 4278359 (-) True G82246
TU110644 other downstream 3538269 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 3736125 3380027 ~ 3380528 (-) True G82122
TU111877 other upstream 170687 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 1458046 8575254 ~ 8575431 (-) True LOC120564825
XR_005640160.1 other upstream 2392734 9509942 ~ 9510071 (-) True LOC120564823
XR_005640161.1 other upstream 2956085 10073293 ~ 10073422 (-) True LOC120564824
TU112643 other upstream 2969156 10086364 ~ 10088600 (-) False pik3c2a

Expression Profile