RNA id: TU112684


Basic Information

Item Value
RNA id TU112684
length 1741
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G83703
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 10189819 ~ 10191806 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTATGTTATACACAGTAATGTGACCTGAGTAAAATCTGACTATGAGTACTGTACTTGACCTCTGATCTcaaattattacaaaaaaagatacATCAAAACAGAAAGTCAGTGCAAACACTTTAATTGAACTAATTAGTCGCAACAACAATTCTGTACAAGCAATTTCCTTTTCcaaaaaaatgttaatgttgaaaCACAGGAAGTTCCAGATCCAAAAAATGTGGTTTCACAGGAACCTGATTCCTGCTCCAAACTGAACCCCGTCACATATCCTGCACGAACAGAGAAAATTAGTTGAAATAAATAGCAAATCAGTTTATTTCCAGTGCATGTTAAGGACACTATGCATGTGTCTCTTGAAAGTGTTTATCTACATGATTGTACAGAAACTATTTTCTCAATATTTACTAAGcaacatgcacatacagtacatacacaacTTTCACACATGTGACATTTACACTGCACGAGTTGAAGTCACCCACCTGTACAACCTGTGGTTTTTTGGTCTATGCTGGTCTTTTCTAACTAAATCATTTATCTTCTGTTTGCAGGGAGAGCTATTGGACATCAAGTTTAGCTAGTGTGCCTTAAATGTCTTTAAAGTAAGTCAAATAGGTGCAATTCCAAATCTTACCTAAAACTAGCTACCCTTATCAGCCCTACCTGTCTCCACTCTGGACTCCCATGGGAATGCAGTAATTCAGCTCCAGTCTGGCAATGTTTCCCAAACGCAGCACAATGCCCAGTCCATATGACCAACGGATGCTTTCGGCCAGTTTCTTCAAATGTGCTtttggcccctcacctgaTTAAGGTTACAAAGGTTTCCGGCATTGAGGAAGAAGTGTGTTCTGAAGAGGTCACCAAAGCCCCCCTTGCCTGGTCTGAAGGGTAGAGGGGTGTAAAGGTGGAGGCCTCCAGCCCAGTAGCCCTCTCCTCCCAGGTAGTCACCTGCCACACCTTCACTCTGTGGGCCCAAACTGTACATACTGAATCCCCTGATACTGGTGGGGCCACCAAGATAGAACCTAGAAGGTTGACAAagacacataaaacataaaatatgtaataCAGAAAGAACCCTACAGTtaattgtgttttaaaaaaaatttaatttagtttGCACAATTGCAGCATTTTGCGTCAAAAACTTCACTCCTAAGTCATAACTTGGTCAAATCTGAACACACATCCATGATACACATATGTTTAGAATCAACGTGATTTACACTTTTCAAGGACATATATACTATCTGCAATGTCCATCGcaaataaacatacatatatctacTTAGAAATCATTGAAAAAAAGACACTCCTTCAGAACTTGCCTGAGAATGATCACGTTTTTAAGTATTCTTCAGTATTAAAGTAGTGATAGTTGTCTAGACAGCCATGGGTACATTGCAAACAGGAACTGCCAATAGATAATTCAAAAATACTTTTAATGGTGCCAATTtgccaaaatgaaaacaaaatgtaggcgggggaaaaaaaacagtctcTAGCTGTCTCAAGTcaagacttaaaaaaaacccTGGTCTTGTGGATAATGGTAATAGGGTGGTGAATTGTAGTTCTGTACCGGTCTGCTATGCTTGTTGGCTTGTCACCAATGGGCAGGAGCAAACCGCCCCACAATGAGGCAGAAAGGACCTGGAGGAGAAAGTCAAAGGGTTTAGTCACAACAATCTAACAAAGAAGATaagaacataaaaatatattccTGGCTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112679 lncRNA downstream 5179 10184236 ~ 10184640 (-) True G83699
TU112642 lncRNA downstream 55074 10132747 ~ 10134745 (-) True G83669
TU112618 lncRNA downstream 120045 10067929 ~ 10069774 (-) False ppp1r15b
TU112613 lncRNA downstream 284904 9894777 ~ 9904915 (-) True LOC120563773
TU112573 lncRNA downstream 297064 9891384 ~ 9892755 (-) True G83613
TU112737 lncRNA upstream 10925 10202731 ~ 10204403 (-) True G83744
TU112740 lncRNA upstream 23597 10215403 ~ 10277798 (-) False G83746
TU112741 lncRNA upstream 23597 10215403 ~ 10277798 (-) True G83746
TU112755 lncRNA upstream 98990 10290796 ~ 10294507 (-) True G83759
TU112761 lncRNA upstream 119281 10311087 ~ 10311373 (-) True G83765
XM_039809350.1 mRNA downstream 9818 10174471 ~ 10180001 (-) False tdg.2
XM_039809349.1 mRNA downstream 9818 10174471 ~ 10180001 (-) False tdg.2
XM_039809347.1 mRNA downstream 9820 10174471 ~ 10179999 (-) True tdg.2
XM_039809226.1 mRNA downstream 16477 10166324 ~ 10173342 (-) False tdg.1
XM_039809225.1 mRNA downstream 16477 10166324 ~ 10173342 (-) True tdg.1
XM_039809836.1 mRNA upstream 194519 10386325 ~ 10397440 (-) False LOC120564668
XM_039809835.1 mRNA upstream 194519 10386325 ~ 10397440 (-) True LOC120564668
XM_039809905.1 mRNA upstream 257534 10449340 ~ 10467674 (-) False acanb
XM_039809904.1 mRNA upstream 257534 10449340 ~ 10467674 (-) True acanb
XM_039809210.1 mRNA upstream 354969 10546775 ~ 10632785 (-) False map1ab
XR_005640102.1 other downstream 9822 10174824 ~ 10179997 (-) False tdg.2
TU112643 other downstream 101219 10086364 ~ 10088600 (-) False pik3c2a
XR_005640161.1 other downstream 116397 10073293 ~ 10073422 (-) True LOC120564824
XR_005640160.1 other downstream 679748 9509942 ~ 9510071 (-) True LOC120564823
XR_005640162.1 other downstream 1614388 8575254 ~ 8575431 (-) True LOC120564825
TU112851 other upstream 235756 10427562 ~ 10432144 (-) True G83826
XR_005640086.1 other upstream 452226 10644032 ~ 10662678 (-) False scamp2
TU113209 other upstream 1696221 11888027 ~ 11888398 (-) True G84083
TU113260 other upstream 1949717 12141523 ~ 12144546 (-) True G84123
TU113814 other upstream 3038811 13230617 ~ 13231095 (-) True G84530

Expression Profile