RNA id: TU112840


Basic Information

Item Value
RNA id TU112840
length 1084
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G83819
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 10368773 ~ 10372179 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagtataatatgtGAGATAATATACAGTTTTAACTGGACAGTTgtctacaaaaacaaaaccgtAATTTTTAATTTctagtaaaaataaaatcacacatttacagTGTCTGAAGATGCTCACCTGAATCCTCCTGTTCAGCAGCTTACTGGTCAAGATTTTGAGGGAGGGGCAGCGTTCGCGGCAGAAACCGGCCAACCGGCTGAGGTAGCGCGTCGTGCAGGTGTCCCTGACCATGTGACCTGGATGGGCAATGTCCAGCGCCTCAAAGTCATTGTAGATGGAGTGGCCGACGACCACTTTGCCCTCAAGTATACTGAGGAtctacaggagagaagcTCCTCCCTGGCCTGAGCAAAGGGCATGGCGTTGTGCAGGTGATGCCTCCGGATGCCACTCCAGCGAGTCCTGTAATCTGTGACAGGCTGACACGGTCGGACATATTTATCATACAATACGTTGCCATGATAGTCCAGGATGCTGCAACGGGCCAGCTCGCTGCAGCTCCCGCCAGGCCCCGTCCCAACCATCTCACAGTCCAACGCCACCACTGTGGTCGAGCACAAGCTGAGGCACGGCGAGCTCCGCCCACTGACCGGAGGACTCGTCTCAGAGGAGAAACCACTGTCCACCTCCCAAATGTCTTTGAGGGCTGTGACTAAACTGTGGTGCTCAGAAGCTTTAGGCTCAAGGTGTTCAGGTTCAGATACATGAGTGCTCTTGCTTTCAGAGTCCAGAGTGTTTGTATTgttaaattttgtttttttgaccaGTTTATTTTTATCCAGTGGTTCATTATGGTTGTCCATGGTTTTCCTTTTCATGTTGGCAATGCTTATCTTCTGCTGGCATTTTTTCCTAGATCTCGCATTTTCCATGGCACGAAGCATCATCGATTTTTTGCACAAATATCGGTAGTTGCTGAAAAGCCCCCACGAGGCAGCTTTATTCCTTTTTGACGCCTCTGCCATCATCAACACATGAAACTGGCATTGCAGTCATTTCTTTTGAGGTAGCTAGCACGTGTGTCAGAACATGCCTGGACATATGTCCTTTGCTCTTCATCTGATTGGCTCCTTCTCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112789 lncRNA downstream 891 10361594 ~ 10367882 (-) True G83786
TU112787 lncRNA downstream 891 10363800 ~ 10367882 (-) False G83786
TU112788 lncRNA downstream 891 10363800 ~ 10367882 (-) False G83786
TU112785 lncRNA downstream 7366 10359835 ~ 10361407 (-) True G83784
TU112781 lncRNA downstream 14364 10350483 ~ 10354409 (-) True G83781
TU112852 lncRNA upstream 17065 10389244 ~ 10432144 (-) False G83826
TU112893 lncRNA upstream 165652 10537831 ~ 10540661 (-) True G83854
TU112914 lncRNA upstream 334239 10706418 ~ 10713107 (-) False LOC120564603
TU112966 lncRNA upstream 451107 10823286 ~ 10900547 (-) False oaz2a
TU112963 lncRNA upstream 528477 10900656 ~ 10913212 (-) False oaz2a
XM_039809350.1 mRNA downstream 188772 10174471 ~ 10180001 (-) False tdg.2
XM_039809349.1 mRNA downstream 188772 10174471 ~ 10180001 (-) False tdg.2
XM_039809347.1 mRNA downstream 188774 10174471 ~ 10179999 (-) True tdg.2
XM_039809226.1 mRNA downstream 195431 10166324 ~ 10173342 (-) False tdg.1
XM_039809225.1 mRNA downstream 195431 10166324 ~ 10173342 (-) True tdg.1
XM_039809836.1 mRNA upstream 14146 10386325 ~ 10397440 (-) False LOC120564668
XM_039809835.1 mRNA upstream 14146 10386325 ~ 10397440 (-) True LOC120564668
XM_039809905.1 mRNA upstream 77161 10449340 ~ 10467674 (-) False acanb
XM_039809904.1 mRNA upstream 77161 10449340 ~ 10467674 (-) True acanb
XM_039809210.1 mRNA upstream 174596 10546775 ~ 10632785 (-) False map1ab
XR_005640102.1 other downstream 188776 10174824 ~ 10179997 (-) False tdg.2
TU112643 other downstream 280173 10086364 ~ 10088600 (-) False pik3c2a
XR_005640161.1 other downstream 295351 10073293 ~ 10073422 (-) True LOC120564824
XR_005640160.1 other downstream 858702 9509942 ~ 9510071 (-) True LOC120564823
XR_005640162.1 other downstream 1793342 8575254 ~ 8575431 (-) True LOC120564825
TU112851 other upstream 55383 10427562 ~ 10432144 (-) True G83826
XR_005640086.1 other upstream 271853 10644032 ~ 10662678 (-) False scamp2
TU113209 other upstream 1515848 11888027 ~ 11888398 (-) True G84083
TU113260 other upstream 1769344 12141523 ~ 12144546 (-) True G84123
TU113814 other upstream 2858438 13230617 ~ 13231095 (-) True G84530

Expression Profile