RNA id: TU112851


Basic Information

Item Value
RNA id TU112851
length 3348
RNA type TUCP
GC content 0.40
exon number 4
gene id G83826
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 10389244 ~ 10432144 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttttaaattatttattcttCATTTTAAGATACAAATACCAAACATAAAAGGAATCCTCTTAGAAACACAATACTGaaatgattctttttttttttaaatcccgtCAAACTTCTATGGAGGTCAACAGTCAGTATAGCAGGAAATTAACTCATAtaatatcataaaacacatccattattttttttttaatcaatcatAGAAAACCTGAACAGTGGGgacacaaaatatatacaatacttTGAATGTTGATAAACACCGAGAAAATATATGAAGCTAAGTCACCAATAAATTCAAAATCGGTTCAACTTAAGTAACACTAGTCAATAAAAATGCATGCAGACGTGGATAACAAGGGTGACTGCTTATGGAATTGTCTgcaacaataataaatattgtaTAGGGTTTGACAACAACCTCTCAGTGACACCGCTATCCCCTTATGCATTTTTTAAAGATCTTGAATTAATATTCATCGTTATCAAAACTAACACAGTATTATATTGCACAAGCCCATTATTCATAACTCATGGGGTGGAAAGGTTTAGAATACTGTGACGGGGAGCGGCAGAAGCAGATGATGTGACGGATCGTGTCACATGTCCAGTGGGACCGTAAAAATCAGTTTTAATTTGGTTTCTCTATTACGTCTTATCAGCGGGGCCTCAGCTTTCAACTGGAGGCTAAATGTTGGACCCTGAATATATGGGCTGCAGCAGACATTAACATCCACTAATACGGACAGATCTCAGTACAAAAGTATTGTATATAGGCATGTCACATAACACTAAACAACCAAAGCAAGGGATTCCCCCAGACTTTCAAAGCTCAGTTTAATCGGACAAAGAAACTGAACTGCGagtatattttcttttgcttaTACTTTTacatgtaatatgtttactgcTCTTAAACACTTCAATTATACGGTTTGAAATAATACTAAAATTTTAAAtgtcaaaacacaaacatcaaagtGCCATAAAAGAGGTGAAACTGTGAagcacagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgaatgagAAATGTTTCAGTAGCATTGACTGTACATTAGGAGCTGATCTGCTTTGACCTGAGACGATAACATCCATCAGAAATATTTATCTTGCAGCCTCTACACTATTGTTTATTTCTCCGTTTATGATTCTAACCAATTAGTAATGAAGACAATGGACAAAGTCTTGAATTTAATACTGTCATTTCAAAAACCCTGTCagccttaaaaaacaaaaacattgttttttgatTTGTGGGAAGTGTGGAAGTGTCCAGATCTGAAGTGGTTCTGGTTATAACAATCTCAACACATGCTTCTTTCTACAATAATTTCACCTCAACAGCCTGTTGTTTCTTTTAATTAACCACCTCATAAAATTTGTTACACATTGTAGCAGCCAATGACATGAATACTGCAATAGCTGTCacgtgtaaaaacaaaaacaaactctgaatgaataatgtaagaCTTCAAAATGTGAGTTCTTGTGTAAGATGTCAAATCAGCCCATGACAGCAGTACGTGTAAATCTCAGTCAATCGCTCACTTTTCAAAAGAGATAAAGTGCCTCTGCTCTTTCACTCAACAATGATCTCAAACTCTTTTTGGTCAATTGTTCAGAAGAGTTCTTCTGGCCTTTAGTTCACATCTGTTTGGCTGCTAAACTGACTGACTGTGATGgttcattgacttcaatgtCCCACAATGATATGAAATCTAAAATCTAATTTATGTGAATAATCTTTCATTCGGTGTGTGTCTGCGTCAGTTCACCATAAActatatttttctaaataaaccCACAGAAACAAAAGTCTGAGGGTGTGTTGGCACAAGCCTCCAAATGCTTGGGGAGTACATGTTTGTACACATGTTTAGTAAAAATGAGGAATTGTGTAAATAGTGGGATGCTCACATTTCTGTTGTTGGCTGCAGAGTGAATACTATGTTTACATCTTGGATGTTAACCCTCTAAAGCAGTTCCAAGAAATGTACTGTAGGAAACATGAACTGAGGATTTTACTGTCCAAACCACTGCAGAGAAATATAAGGAACACTAAAACACTCACAGTGGGACACCTTCAGATTTTGAGTGTCTTATTTCTGCTCaacagagctttttttttttttataactatttggtATTACTTTCCCCATCAAAGAGCAACAAGCATGTTTCTTATCAGATTAAAGGTTTCTTGCCAATATATCAATCATATTTACTTATGTGTAGATTCACTTTTTggtaaagaaaaataataactaaGCATTAATGTATCATCTGAATGATGGATAACCTTTCACTggacaaataaaattgattgattgtttaattatatatatatattgtgcgGCTTGAGGGGAAGTGAAGTGTTTGGTTATAGGATGTGAGCAAGCTGTCAAGTGGAGCTTATGTACATCACCAGCCGTAGGTCTTGGAGGTTCAATGTTCCAGGTAGAACTGATCTAGGATCAGAATCTGGACAGCACCAACTAATACAGCAGCAGTCCTGTTACCCCTGACCTTAGACACAGGGATGAGGGAGTCAACACCTTTGATTTAGCCGCTAGGTGGGATACAAATCGGACCCTGAGCTCTGCTCAGTGACAAAGAAGATATACGGTCGTTTCTTGAAATGATCACAGATTTGGTTCAGGTGGAAAAGAAGAGTGATCTATTCAGGAAACGAACAAAGAGGGAACGCTGTGAGCTAAACTCAATCAGGGCCCTGGTAACAGTGGTTAAAGGTAACATCTCCCACCTGCAACCAGCCAGGGTTGGGGTGGTGGTGTGCTACTCTGGTGTTTGCTGCCCCCTAGGGCTGAGAGCAAGGCAGTGCAGGTGTGGCTCAGGagggagaagggagggagggaagcgaggagggaaggggggaggtagagagaggaggaggaggagggggagggaggctGGACCAGGCCGGCGCTACTCGTCACAGCCCAGAAGCTCCATTCGCAGGGTGATGCGCTCATGCCACTCCCACGGCAGGATGCGGACGTACCGGGCGTAGAACGAGGGCTCGAAGATGTTCTTTTTGTGAACGTTGTTGTCGCTGTTTCCTGGGAAGATCTTGTCTTTCTGTGTGGTTGCGTCCGTCACAACGGTCCAGGACGAGCCATCATCACTGTGAGCCACTTTGAAGGCTGTGACGAATTGGATGGAGCCAAAGTCTTTGGCCCCCTGCGTGATGACTCCAGTTATCTTCTTGGTAGAACCAAGGTCCACCTGAGGACACAGAAACAGCTTCGTTTTACAAACGCAGCAATGgacaaactaaaaaaacaacaatgatcGAATGAAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112840 lncRNA downstream 55383 10368773 ~ 10372179 (-) True G83819
TU112839 lncRNA downstream 55383 10368863 ~ 10372179 (-) False G83819
TU112789 lncRNA downstream 59680 10361594 ~ 10367882 (-) True G83786
TU112787 lncRNA downstream 59680 10363800 ~ 10367882 (-) False G83786
TU112788 lncRNA downstream 59680 10363800 ~ 10367882 (-) False G83786
TU112893 lncRNA upstream 105687 10537831 ~ 10540661 (-) True G83854
TU112914 lncRNA upstream 274274 10706418 ~ 10713107 (-) False LOC120564603
TU112966 lncRNA upstream 391142 10823286 ~ 10900547 (-) False oaz2a
TU112963 lncRNA upstream 468512 10900656 ~ 10913212 (-) False oaz2a
TU112979 lncRNA upstream 492359 10924503 ~ 10925018 (-) True G83911
XM_039809836.1 mRNA downstream 30122 10386325 ~ 10397440 (-) False LOC120564668
XM_039809835.1 mRNA downstream 30122 10386325 ~ 10397440 (-) True LOC120564668
XM_039809350.1 mRNA downstream 247561 10174471 ~ 10180001 (-) False tdg.2
XM_039809349.1 mRNA downstream 247561 10174471 ~ 10180001 (-) False tdg.2
XM_039809347.1 mRNA downstream 247563 10174471 ~ 10179999 (-) True tdg.2
XM_039809905.1 mRNA upstream 17196 10449340 ~ 10467674 (-) False acanb
XM_039809904.1 mRNA upstream 17196 10449340 ~ 10467674 (-) True acanb
XM_039809210.1 mRNA upstream 114631 10546775 ~ 10632785 (-) False map1ab
XM_039809208.1 mRNA upstream 114631 10546775 ~ 10632785 (-) False map1ab
XM_039809209.1 mRNA upstream 114631 10546775 ~ 10632785 (-) False map1ab
XR_005640102.1 other downstream 247565 10174824 ~ 10179997 (-) False tdg.2
TU112643 other downstream 338962 10086364 ~ 10088600 (-) False pik3c2a
XR_005640161.1 other downstream 354140 10073293 ~ 10073422 (-) True LOC120564824
XR_005640160.1 other downstream 917491 9509942 ~ 9510071 (-) True LOC120564823
XR_005640162.1 other downstream 1852131 8575254 ~ 8575431 (-) True LOC120564825
XR_005640086.1 other upstream 211888 10644032 ~ 10662678 (-) False scamp2
TU113209 other upstream 1455883 11888027 ~ 11888398 (-) True G84083
TU113260 other upstream 1709379 12141523 ~ 12144546 (-) True G84123
TU113814 other upstream 2798473 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 3141687 13573831 ~ 13617896 (-) True mafb

Expression Profile