RNA id: TU113491


Basic Information

Item Value
RNA id TU113491
length 1528
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id G84294
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12830356 ~ 12834571 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctGAATGGATGAGTTTAGAAAAGGCATAGAGGTGTACAACAATATAGGATATATTCAGTAGTTTCCTTTGTTTTCCCCAGAGAACTACTGCAACCCTCCGATGACCTGGGGTCTATACTGTACCTAGCATAGGCGCACTTGCACTCCGGCTGCGGTCTTCATGTGTTACAAaagtacacacaacacacgacAGGGTCCGACAGAAAAAGAACAAGACAAAGGGCAGACATTATGATTGGAATAAGGACAGGATTGGAGGTGGaacaaaaacagacatacaTGTGTATagtacaacaaataaaataaaataaataaaaccacatACACAGAATTTAAGGGCATACAACAGGACAAAAACAGACTTCCGTAATTAAATGGGGATCACAGCTTGTGTGGACTGCAAATTATAGTCTTGGTCCATATAGTATATCTCATGGGTGTGGCTTGGTGAAATAAAAAGTCGgccatggggggggggggagaaaaaactCCAAGAAAATCTCACTCTCCAGTGAACTGCAAATCAATTGCACAGCTagcttaatgttaaaaatagccCCAAATACAGACAGAGCCACCTTGTGGACTTGTCCTTATCCAGCTACTTAATCATGCGGTTTGCTCTTACCAAGGTTAGGGGTGCTGGCTGTCTTCTTGCCCCCACGGATCTTGAAGAAGCCCTTTCCAAAGGATGAACGAGCCTTTCTCGAGCCAAAGCTGTCGTCCTCTGTGGTGGAAGGCAAGGTGGCCGAGGGACTCCTAGGCGGCTTTTCACTGATCTTACTGATCTCTTCGCTTGTATTCTTTTCATTATTGCTCTTATCCAGCTGGTTCTGGCTGCCAGTCTTTGTGGCATCTTGGCTGCTTTCTACATCTGTTGGAGCAGACTCTGATACTGGTTCTGGATCTGAAGGGCTGGGTGTGGGAGAGGGCTCTTCACTCAGTCCATTGAGGCTCTCCAActcatctgGGCTCCTCCTTTTCAGTTGTTCAACATCTGTAACTTCATACTTTTCTGACTCGGCAGACACCGGGTTGGCTGACAAGAATGCAATGGATCCATCACTATGACTCTCGACGTACTCgttttctctgcttttctCTTTCTTCCCTTGCACTGACATCACCATGTTTTGAACTTTCTTATACCGCAGCAGCGACTGCTTTAGTTCCTCAATCTTACGATCCTTCTCTTCATTGGCTGCCATCAACGATTCAACTGCCTTTTTCATTCTCTGCACTTCCACATCTAGTGAGGAAAGAAAATGATTACAGACAAAGAACTGTAGTGTTGACAGTGTCAAGTTTAAAGAGGGTACAAAGAGGGGGACAATGAGCCTGAACGCACATGGTGCCAATGGAGGACTTAACTCATTCAGACCACACAGGCCGCAACATTACTGCACATAATTCCAGTTACTTCACAGCCACATTCTTTGTTTCTTTCATAGTCCTTGAATTTGATACATCATATCCTTGTGTGAGCAGGAGTTTTCACTTGtagaacattttcactttttagAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113413 lncRNA downstream 141721 12687483 ~ 12688635 (-) True G84243
TU113414 lncRNA downstream 143069 12687034 ~ 12687287 (-) True G84244
TU113401 lncRNA downstream 217080 12580603 ~ 12613276 (-) True G84236
TU113270 lncRNA downstream 624825 12205241 ~ 12205531 (-) True G84130
TU113268 lncRNA downstream 629521 12177943 ~ 12200835 (-) True G84129
TU113522 lncRNA upstream 51092 12885663 ~ 12885917 (-) True G84320
TU113523 lncRNA upstream 52020 12886591 ~ 12886903 (-) True G84321
TU113527 lncRNA upstream 57455 12892026 ~ 12893439 (-) True G84324
TU113529 lncRNA upstream 62488 12897059 ~ 12898557 (-) True G84326
TU113547 lncRNA upstream 74396 12908967 ~ 12909946 (-) True G84338
XM_039808821.1 mRNA downstream 56101 12760632 ~ 12774255 (-) True slc17a8
XM_039809442.1 mRNA downstream 71565 12742142 ~ 12758791 (-) True nr1h4
XM_039809443.1 mRNA downstream 71566 12743161 ~ 12758790 (-) False nr1h4
XM_039809445.1 mRNA downstream 73468 12743161 ~ 12756888 (-) False nr1h4
XM_039809446.1 mRNA downstream 74644 12743161 ~ 12755712 (-) False nr1h4
XM_039808882.1 mRNA upstream 80067 12914638 ~ 12931212 (-) True si:dkey-103i16.6
XM_039808885.1 mRNA upstream 106425 12940996 ~ 12944236 (-) True LOC120564143
XM_039808886.1 mRNA upstream 131393 12965964 ~ 12974409 (-) True LOC120564144
XM_039807480.1 mRNA upstream 167549 13002120 ~ 13014975 (-) True LOC120563354
XM_039807482.1 mRNA upstream 167549 13002120 ~ 13013503 (-) False LOC120563354
TU113260 other downstream 685810 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 941958 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2167678 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2398212 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 2650359 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 396046 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 739260 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 1196533 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1388679 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1667389 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile