RNA id: TU113547



Basic Information


Item Value
RNA id TU113547
length 805
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G84338
representative True

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12908967 ~ 12909946 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAAGGGTTTAGCAGATTTGTATTCCTCTGTGTCTGAGTCTTCATCTTGGGAGTACTgagtctctcctctccctcctgcgAGGAGTCCTCGAGCCACCAGGAGTCCTGCTGCGTTTCCATATCCTGTGTACTTCAACAGGTTGTCCACTACAAGACAACACCACAAATACACAAGGTTGTGAAGTTACATATAAATGTTCATATGTGAGCATGAGCCGTGCTGTAGTTATATGGTTCTACAGCAGTAATGCATCGGTCACTTCATCACTTGCATCCAACTAGAGATGACATTCCTGCTCGCTCATTCTCATATTTTCTCATTTGGTGTGCTGTGCCACCTGTTCCTCCCATGACCCGACCACTGCTCACCGCTTTCTTTGCAGAGGACAAAGAGAAACTCTGCAGCGCTCTGCTTCACACCCATGTCAACATGGGTCATAAGGCGGACCAACTTGTTTCTGGTGGTGGTGCCGATCTCTGGCCTGATCTTCACATCTTTCAGTGGGGGAAGTACCTGAAAATGCAGACATTATAAATGGTTCAGATTATtttcagatatatacacatatacacatatatatatacacacacacacacacacacacacacacacatatacacacacacacacatatacacacacacatatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113529 lncRNA downstream 10410 12897059 ~ 12898557 (-) True G84326
TU113527 lncRNA downstream 15528 12892026 ~ 12893439 (-) True G84324
TU113523 lncRNA downstream 22064 12886591 ~ 12886903 (-) True G84321
TU113522 lncRNA downstream 23050 12885663 ~ 12885917 (-) True G84320
TU113491 lncRNA downstream 74396 12830356 ~ 12834571 (-) True G84294
TU113560 lncRNA upstream 28098 12938044 ~ 12939417 (-) True G84350
TU113590 lncRNA upstream 38328 12948274 ~ 12948609 (-) True G84369
TU113591 lncRNA upstream 38715 12948661 ~ 12948923 (-) True G84370
TU113597 lncRNA upstream 62443 12972389 ~ 12984060 (-) True G84376
TU113600 lncRNA upstream 68016 12977962 ~ 13046029 (-) True G84378
XM_039808821.1 mRNA downstream 134712 12760632 ~ 12774255 (-) True slc17a8
XM_039809442.1 mRNA downstream 150176 12742142 ~ 12758791 (-) True nr1h4
XM_039808882.1 mRNA upstream 4692 12914638 ~ 12931212 (-) True si:dkey-103i16.6
XM_039808885.1 mRNA upstream 31050 12940996 ~ 12944236 (-) True LOC120564143
XM_039808886.1 mRNA upstream 56018 12965964 ~ 12974409 (-) True LOC120564144
XM_039807480.1 mRNA upstream 92174 13002120 ~ 13014975 (-) True LOC120563354
XM_039807482.1 mRNA upstream 92174 13002120 ~ 13013503 (-) False LOC120563354
TU113260 other downstream 764421 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1020569 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2246289 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2476823 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 2728970 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 320671 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 663885 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 1121158 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1313304 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1592014 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile