RNA id: TU113560


Basic Information

Item Value
RNA id TU113560
length 1374
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G84350
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12938044 ~ 12939417 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGcatgttttatttaaacaatATAATATTGCCATGTTTCAATAAATTCTCATTTTCACTTCAAAACATTCTGCAACATGGATGAAACAAAAGCTTTAAAAGCTTTGTTTTGCGTTATACAAGACTTAAATGACATTTTCaagttacattttacaaaaactacttttttaattaaatttactATTACGGGCTTGTCAGCTTAAAAATGTAGTTAACACTAAAAAGTCTGTGTATCGTATTGAATGCAACGTCAAGAAATACAGCCATCAGATCCCTACAACAGTCAACACAGTGACGCTAAGCAATATGGAGGAGCATTAGAGAAACGTTCAGGGTGAAAACTAATTATTTGATACAGTGGGAGAAACTAATGCCATCACGAAGCGTATGTGTCCAAAGGAGAAATGTTGACATACTTTGATTTAGGAGTGAAATCAACCAACAGTAACTATCAAAATATAGTTAGTCAAAAGAGGTTATgtataaaatgttatttattgaTAGTCATAGTGAATCAATTAACACTACAGCTGGAAAGGAATTGCAATCAAAATACTCtgacttttatattttattgtaatGATTTAGATTATGTATCAAAAGTACGAGTCACCCTCCACTCCAGTGAGAATATAACCACCAGAGGGCGATGTGAATTcagaaaaaattgaaattgttaCAAAAACTCCTCAGAGGAATATTCAGTTACAGCCAGCAGGTGGTTTCGATATTAACCTGGACTGTACTCTTTGATCAGACGTATTTGTTCATTTGTGCAGGCTGAACAAAGTGAACTGAGCAGAAAGGTGATTTAGTCACCCTATACACATTTTCTGATCCACATGTTTGTCAGTTGACAGTGAAACACCTTGTTAGTTACAGATCATCATTGATCAATGATTGTCCTGCAAGTGAAATTTAAGTGCATTTACACTCTGAGCTTTTGTCCTCTGGTACTGATGTTAACTTATGTGGCGAACACAACAGTTTGCAGTGTTGTCGCTTATTATCAAATATGAAACATGGACATTTTATTTGAGCAATTTCAGGCACTGGTGATTATAGTGTGTTTCATTTAACAACAGAGCAGGAAAGTCTTTGTTAGTTCTTGCTTTGTGGGTCCTAGCCACAGAAAGTATATGAAGGTGGGTTTACCAACAAtcacattaaaaacaacaaacaaaaacaaagacccCTCACCAAAATGTGTACACTAAACTTTTGAGTCCTCTGTTGCTCACGATTGCTAACACAGGCAACAGCACAGTACGAGCCATAACacctcagctgtgtgtgttcactctcctctccccgTCAGTCAGACTTGTCCTTCTTTTTGCCTCCTCCTATGGGAACTTTGCTGACCACTgcagag

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113547 lncRNA downstream 28098 12908967 ~ 12909946 (-) True G84338
TU113529 lncRNA downstream 39487 12897059 ~ 12898557 (-) True G84326
TU113527 lncRNA downstream 44605 12892026 ~ 12893439 (-) True G84324
TU113523 lncRNA downstream 51141 12886591 ~ 12886903 (-) True G84321
TU113522 lncRNA downstream 52127 12885663 ~ 12885917 (-) True G84320
TU113590 lncRNA upstream 8857 12948274 ~ 12948609 (-) True G84369
TU113591 lncRNA upstream 9244 12948661 ~ 12948923 (-) True G84370
TU113597 lncRNA upstream 32972 12972389 ~ 12984060 (-) True G84376
TU113600 lncRNA upstream 38545 12977962 ~ 13046029 (-) True G84378
TU113607 lncRNA upstream 51610 12991027 ~ 13040446 (-) True G84384
XM_039808882.1 mRNA downstream 6832 12914638 ~ 12931212 (-) True si:dkey-103i16.6
XM_039808821.1 mRNA downstream 163789 12760632 ~ 12774255 (-) True slc17a8
XM_039809442.1 mRNA downstream 179253 12742142 ~ 12758791 (-) True nr1h4
XM_039808885.1 mRNA upstream 1579 12940996 ~ 12944236 (-) True LOC120564143
XM_039808886.1 mRNA upstream 26547 12965964 ~ 12974409 (-) True LOC120564144
XM_039807480.1 mRNA upstream 62703 13002120 ~ 13014975 (-) True LOC120563354
XM_039807482.1 mRNA upstream 62703 13002120 ~ 13013503 (-) False LOC120563354
XM_039807481.1 mRNA upstream 64281 13003698 ~ 13014975 (-) False LOC120563354
TU113260 other downstream 793498 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1049646 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2275366 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2505900 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 2758047 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 291200 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 634414 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 1091687 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1283833 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1562543 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile