RNA id: TU113597



Basic Information


Item Value
RNA id TU113597
length 738
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G84376
representative True

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12972389 ~ 12984060 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATTTAATATGGACATTGCAAGGCGTTGCTACAACACACAGCAGAAATAATTCATACCTATTGATGGTGATTTGAAGGGGTATTTATCTGGCAGGTCCACTCTGACCTTCCACACACCTCCTTCATAAGAcgctgaaaagaaaagaacaatatactcaattgaaaaacatttctaaactaaAACAGTGTCACTGTCTAACTCAGTAACACTGACTGGATGCTGATTAAATGTACAGCATGCTGGTGAAATGCTGGTCAATGAGAGGGAGAATCAATGTGAAAAACCTACATCCAGGCGGTCCGTGGAACTTCACCACAAACTCATTCAGTCCACTAAGGATGGTGACCTCATGCTTGCTCTCAATGCTGATGTCTGGTTAAGGAAAAAGGTGAACCCGAAATACGAGAGGCACAGCATTCAAACACAAGTTCAAcagaaataaatcaaaaacagGCTGCAAAgtgcctctttctctctctgtgaacTTATCTGGGCAGAGGTCAAACATAGGATCAATAACGTGAGCCATGGCAGCGATATCAATAATGCAGTGTTGGACAAACTCAACCAAcagacaccaaaacaacttcacACTCAGCACAGGATATCATCTTATCAAACATGGAAAAGATCACAGCTAGCACTTAAGACTACAGATGCTATTAATGATCACACCTTCACttttctttaaagtgatggttcggagtaatttcaccctagggtcctttgcaccatgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113591 lncRNA downstream 23466 12948661 ~ 12948923 (-) True G84370
TU113590 lncRNA downstream 23780 12948274 ~ 12948609 (-) True G84369
TU113560 lncRNA downstream 32972 12938044 ~ 12939417 (-) True G84350
TU113547 lncRNA downstream 62443 12908967 ~ 12909946 (-) True G84338
TU113529 lncRNA downstream 73832 12897059 ~ 12898557 (-) True G84326
TU113607 lncRNA upstream 6967 12991027 ~ 13040446 (-) True G84384
TU113690 lncRNA upstream 209209 13193269 ~ 13193706 (-) True G84446
XR_005640039.1 lncRNA upstream 216883 13200943 ~ 13201663 (-) True LOC120563976
TU113816 lncRNA upstream 251113 13235173 ~ 13235410 (-) True G84532
TU113817 lncRNA upstream 252591 13236651 ~ 13236861 (-) True G84533
XM_039808885.1 mRNA downstream 28153 12940996 ~ 12944236 (-) True LOC120564143
XM_039808882.1 mRNA downstream 41177 12914638 ~ 12931212 (-) True si:dkey-103i16.6
XM_039808821.1 mRNA downstream 198134 12760632 ~ 12774255 (-) True slc17a8
XM_039809445.1 mRNA downstream 215501 12743161 ~ 12756888 (-) False nr1h4
XM_039807480.1 mRNA upstream 18060 13002120 ~ 13014975 (-) True LOC120563354
XM_039807482.1 mRNA upstream 18060 13002120 ~ 13013503 (-) False LOC120563354
XM_039807481.1 mRNA upstream 19638 13003698 ~ 13014975 (-) False LOC120563354
XM_039807483.1 mRNA upstream 19638 13003698 ~ 13013503 (-) False LOC120563354
XM_039809178.1 mRNA upstream 32505 13016565 ~ 13026368 (-) True LOC120564327
TU113260 other downstream 827843 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1083991 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2309711 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2540245 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 2792392 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 246557 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 589771 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 1047044 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1239190 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1517900 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile