RNA id: TU113607



Basic Information


Item Value
RNA id TU113607
length 627
lncRNA type read_through
GC content 0.43
exon number 2
gene id G84384
representative True

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12991027 ~ 13040446 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


aagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggggaatcCACGCTTATCTGATTTTGAAGTTGAGACCGCTCAGAAATGGTGGATTGTCATCCTGCAGTCCTCTGTCTGCGAGGGAGAGATGCCCGATGATGcagtaaaatgtttaataaagacaacaacaacaaaaagaacttGCGCATGTTATGTCAGTCCTCCGTCCTCAGTCTGGACAAGCAGTGTGAAAGCCTTGATTGAAGCCACCAAAAGATCGTGGAAATGAATGATGCACTCCTTTCTGATCTAAACAGGCTCTTGAGGGCGAAGAGGAGGGTGAAAGTAGTAAGGGTTAATATTCTGCAATATCATACTGCAAATCCTTGTGTAGCAATAAAAATCCTCgtgttgctgtaaaaaaaattgtcttgtttaaatatgaatatagTACGGAGTTTCTGCTCTTTAGGAAAGGACTGTCTGCTGTGAGGCGAAGGGGGCTAgatctccccgttcactacaaCTCCATGTCCTGAGCCTCGTCCTCCGAAAAGTCTGACATGGAGCTCTCGGAGGAGGAGTcgcctcctccctcctcctgctcctttaGAGCCTCCTCTGTGGCATACTTCTGGATGTACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113597 lncRNA downstream 6967 12972389 ~ 12984060 (-) True G84376
TU113591 lncRNA downstream 42104 12948661 ~ 12948923 (-) True G84370
TU113590 lncRNA downstream 42418 12948274 ~ 12948609 (-) True G84369
TU113560 lncRNA downstream 51610 12938044 ~ 12939417 (-) True G84350
TU113547 lncRNA downstream 81081 12908967 ~ 12909946 (-) True G84338
TU113690 lncRNA upstream 152823 13193269 ~ 13193706 (-) True G84446
XR_005640039.1 lncRNA upstream 160497 13200943 ~ 13201663 (-) True LOC120563976
TU113816 lncRNA upstream 194727 13235173 ~ 13235410 (-) True G84532
TU113817 lncRNA upstream 196205 13236651 ~ 13236861 (-) True G84533
TU113832 lncRNA upstream 206382 13246828 ~ 13249798 (-) False prr5a
XM_039808886.1 mRNA downstream 16618 12965964 ~ 12974409 (-) True LOC120564144
XM_039808885.1 mRNA downstream 46791 12940996 ~ 12944236 (-) True LOC120564143
XM_039808882.1 mRNA downstream 59815 12914638 ~ 12931212 (-) True si:dkey-103i16.6
XM_039808821.1 mRNA downstream 216772 12760632 ~ 12774255 (-) True slc17a8
XM_039809446.1 mRNA downstream 235315 12743161 ~ 12755712 (-) False nr1h4
XM_039808101.1 mRNA upstream 107401 13147847 ~ 13152704 (-) True LOC120563727
XM_039809918.1 mRNA upstream 114965 13155411 ~ 13158096 (-) True kxd1
XM_039809640.1 mRNA upstream 118867 13159313 ~ 13166108 (-) True sinhcaf
XM_039809220.1 mRNA upstream 126872 13167318 ~ 13187582 (-) True LOC120564344
XM_039809829.1 mRNA upstream 148031 13188477 ~ 13192744 (-) True armc10
TU113260 other downstream 846481 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1102629 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2328349 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2558883 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 2811030 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 190171 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 533385 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 990658 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1182804 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1461514 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile