RNA id: TU113814



Basic Information


Item Value
RNA id TU113814
length 479
RNA type TUCP
GC content 0.55
exon number 1
gene id G84530
representative True

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13230617 ~ 13231095 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCTCTGTAGCATTTTCACGTCGCCGTTCTCGGTCTTTGTATGGCAGCTAGCTGGGCTCACTCTCTCCACACCAACGACCGAGCTTCGCTGCGCTTCACTGATTTTTTCCTTCTCCTTGTGCCGTTTCTCTTTCGCCTTTTTCACTTTGTGAGGCGAGGCGAGGAAGTTGCTGATTTTGAAGATTTTCCGAGCGGGAGTAACTGGCACCGCGACGGCGGTGGAGTGGCTCGCCTTGGCCGGGCCGAAACTCCATTTCGCTGGGCTCCCACAACTCTGCTTCCCGTTGTGTTTTTCCCCTGCGCACACCTCTCCGTTCAGTTTCCTGTGCTTCAGGCCCTTTTCCTCCACCCGGACCTTCTTAGGAGGCGGTGGGTAAATGTCGCTGGAAGACTGAGGTCGGCTTTCCGGCGGCCGTTTAGCTATCAGGGGTTTAGGGGAATTTGTTTTGCTGTTTGCTGCGAAATGCATGGAGTCTACGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005640039.1 lncRNA downstream 28954 13200943 ~ 13201663 (-) True LOC120563976
TU113690 lncRNA downstream 36911 13193269 ~ 13193706 (-) True G84446
TU113600 lncRNA downstream 184588 12977962 ~ 13046029 (-) True G84378
TU113607 lncRNA downstream 190171 12991027 ~ 13040446 (-) True G84384
TU113597 lncRNA downstream 246557 12972389 ~ 12984060 (-) True G84376
TU113816 lncRNA upstream 4078 13235173 ~ 13235410 (-) True G84532
TU113817 lncRNA upstream 5556 13236651 ~ 13236861 (-) True G84533
TU113832 lncRNA upstream 15733 13246828 ~ 13249798 (-) False prr5a
TU113809 lncRNA upstream 40157 13271252 ~ 13272529 (-) True G84528
TU113825 lncRNA upstream 91087 13322182 ~ 13325258 (-) True G84536
XM_039809925.1 mRNA downstream 5575 13217937 ~ 13225042 (-) False LOC120564726
XM_039809924.1 mRNA downstream 5575 13217937 ~ 13225042 (-) True LOC120564726
XM_039808544.1 mRNA downstream 14195 13212809 ~ 13216422 (-) True fam185a
XM_039808543.1 mRNA downstream 21076 13204676 ~ 13209541 (-) False LOC120563974
XM_039808540.1 mRNA downstream 21251 13204676 ~ 13209366 (-) True LOC120563974
XM_039808534.1 mRNA upstream 13114 13244209 ~ 13246174 (-) True tmem60
XM_039809624.1 mRNA upstream 15981 13247076 ~ 13256093 (-) True prr5a
XM_039809623.1 mRNA upstream 15981 13247076 ~ 13254911 (-) False prr5a
XM_039809681.1 mRNA upstream 42675 13273770 ~ 13301322 (-) False LOC120564570
XM_039809680.1 mRNA upstream 42675 13273770 ~ 13301322 (-) False LOC120564570
TU113260 other downstream 1086071 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1342219 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2567939 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2798473 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 3050620 10174824 ~ 10179997 (-) False tdg.2
TU113910 other upstream 342736 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 800009 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 992155 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1270865 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 1735360 14966455 ~ 14967447 (-) False si:ch1073-390k14.1

Expression Profile