RNA id: XM_039809623.1


Basic Information

Item Value
RNA id XM_039809623.1
length 2852
RNA type mRNA
GC content 0.44
exon number 11
gene id prr5a
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13246828 ~ 13256093 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCCCCTAAGGAGGCCGCAAATGTGTTGCTTGGGTTTCTCCTGTACCCTTGTGACCATGCTTGATGGACTCAGGCGGAggcacgcctcccggccctccTCACGACCCCTGTCACTCAACTTCAGCACCTTCTCTGCCCCTCCCCCAAGCCCAGACATGGAAAGCAGCAGTGAGCATCCAATCAGGAGGACTCTGCACCGGCTGAAGTTGATGAGCTCCCCCAGCCTCAGCGAGCTGGGGAAAAGTGAGAAAAGTtcaccagaggacagaggagagaagcaGAAGAGGGCAGGAGCCAACGCCACCTGGAACAGCATCCACAACGCTGTCATCGCCGTCTTCCAGAAGAAAGGTTTGGCAGATAACGAACTCTACGTCCTCAACGAAGGTGTCCGGCATCTGTTAAAGACTGAGCTGGGTTTTTTCTTCACAGAATACCTTCAGAACCAGTTGCTTACAAAAGGCATGGTCATTCTTCGGGATAAAATAAGGTTCTACGAAGGTCAGAAGTTACTCGACTCTCTGGCAGAGACCTGGGACTTCTTCTTCTGTGATGTTCTCTCGATGCTGCAGGCCATCTTCCATCCGGTTCAGGGCAAGGAGCCCTCTGTGCGACAGCTAGCTCTGCTTCACTTCAGAAACACCATAGTTCTGAGCGTAAAGTTAGAGGACGCCCTGTCTCGACCTCGGGCCCGCGTGCCCCCCTCTGTTACACAGATGCTGCTTATTCTACAGGGGGTCCATGAGTCACGCGGTGTAAATGAGGACTACTTGAGGCTCGAGTCCCTGATTCAGAAGGTGGTCTCGCCCTACCTGGGCACACACGGGCTTTACTCTGGGGATGGTGCTGAGGACCATTGCTGTGTTCTGGAGAAGCGTTTACCGTGGGGCTGGTCCAAGTCTACGGATCAACCGTCTAAAAACCCTGTGGTACGATCGAAAAGCTACAATATCCCTCTGCTGCTGACCCCTGTGGCTGAATATGACCCAGATGCCAGCTCTGTTGGCAGTGGAGGAATTCGGCGCCACTCGGCCTGTGAGATTATAACATGCCTGGAGGAACAAGGACTGGCCTACGCTGACTTGGCCTCATCTGAACTGTCTGGCCCCTCCTCAAACAGGCTGTGTGTGGGCTCCCAGTTCAATGGTATTGTACAAGCGGGAGCGAGTGCCATGGACTTGCCTCTTTCGTCTCCCTGTATCCTTCCACTTCATTCCTCAGGAGCTCTGCATGGCACTGAGGCCACAACAACAATGACTGATCTAAGTAAGGGAGCATCCTCCACGCCGCCCAGCGAATCATCCAGCCCTGAAACCATTATTGGACAAGTGCTAGAGTCTGCAGACTCAGACTCAGATGGGATATTTATTGATTTCCCACCTCACTCCTCAGAGGCTATGGGGTACTGCCGCGAGAGCAGGCAGAGCACTGTGTAGCTGTGGTTGCCtttaggaacacacacacacaccccttttcAGTGTGTACGTTGATAATTTGTGGGACAGATTTAAGATAAAACTACATTTCATTAAGTTGGTACCATCTTCCTTTGTTACGAGTCAATTCCAAGTGCTTTCACTAGTGAGTGAAAACCTTGCAACTTTAACATGTCTAGTTTTTAAGAGCTAAGAAAAACATCTTTGTCCAACTAATTACAAAGCAAATACCagtggaattattattattaaaaggaCTGAAATATTTTACCAGGTTTTTAATTTGAAGACACCGTAGCTGTGACTTTAGCCAAGCTTTTTATCCTGAGCTTTCAAATATTTTCATAAACCCAAATAAATCAGATTAAGACATaagtctggtgatattctatatttttcttatagacaacaaattccatgaaaagaccaaaatcaATGATAAATTGATCCCAGTTTGCTtctgtagccaaagcctgatttattttattctacTGCCACAGACCTCAATTTTGTCCCAAAACTactaaaaacacattaatgagCCAAATAGTTGCACTGACATGTTTCTTCTTTTGGATgaacatgggcactgtagtttattttgactcaatcccacatacacatCGCTTGTACTGTAAATACTCAATACATCAACAAATGTATATTAATCTGTGGCTGGAAATAGTCCCCAGCAAATGCAGTATTTACTCCTGTTTAAGTAACTtctgctaaaaactacagtgctcAGCTCTTTAAGGGACTTATTTAGCTAGAATTTTAAACTATATTATTGTGACTCATTTTTTAAAGATGTATCTTTAGTATAAACAAATGGGTTTGGAGCTGAGACATGCTGGGGAAGTCAGAGTATTGAGAGATGGACTAACACAttggtggttttggtcttttcataaGATATGTTGACAATATCAAAAATATACACTATAGTTAATATTAACCCATAAAGGAGCATGTAATCTTTCCACTGGGGTTAAAATCAGAGTTATGAGGTTTTCAAACAGCATTAGTTTCTTACCTTTACTGGAGGAGATGGCTGTTAAAGCCACCATTTACATGgaaaagtgacagaaagttaACATATTTATCATGGatttttttgtatatgtgtatttttaatcTCGCAACTGTTTACGCTTCGTTGTCTGCCTCTTGGCAGTAACACAGTAATGAGGTCTTCTGCTCTCTCTTTTGTACGACATCTTATGAAAATGTGGACTGTTGAATTGTTTTCATTGTCAGCGGCGGTTATAGAGGTCTAATGCAAACTTCACTTCTTAGAGCAAACATCAGTGTGACAGTATTTGCTTTTCTGTATTAGCTCTGTAAAGCAGGACTTTAAGGAATGACAATGTTTATTGTTTACATTTGATAAAGACATGAACATTTTGACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113817 lncRNA downstream 10215 13236651 ~ 13236861 (-) True G84533
TU113816 lncRNA downstream 11666 13235173 ~ 13235410 (-) True G84532
XR_005640039.1 lncRNA downstream 45413 13200943 ~ 13201663 (-) True LOC120563976
TU113690 lncRNA downstream 53370 13193269 ~ 13193706 (-) True G84446
TU113607 lncRNA downstream 206630 12991027 ~ 13040446 (-) True G84384
TU113809 lncRNA upstream 16341 13271252 ~ 13272529 (-) True G84528
TU113825 lncRNA upstream 67271 13322182 ~ 13325258 (-) True G84536
TU113827 lncRNA upstream 67271 13322182 ~ 13324173 (-) False G84536
TU113867 lncRNA upstream 71075 13325986 ~ 13385205 (-) False LOC120564547
TU113907 lncRNA upstream 179828 13434739 ~ 13444612 (-) True G84585
XM_039808534.1 mRNA downstream 902 13244209 ~ 13246174 (-) True tmem60
XM_039809925.1 mRNA downstream 22034 13217937 ~ 13225042 (-) False LOC120564726
XM_039809924.1 mRNA downstream 22034 13217937 ~ 13225042 (-) True LOC120564726
XM_039808544.1 mRNA downstream 30654 13212809 ~ 13216422 (-) True fam185a
XM_039808541.1 mRNA downstream 37734 13204676 ~ 13209342 (-) False LOC120563974
XM_039809681.1 mRNA upstream 18859 13273770 ~ 13301322 (-) False LOC120564570
XM_039809680.1 mRNA upstream 18859 13273770 ~ 13301322 (-) False LOC120564570
XM_039809677.1 mRNA upstream 18859 13273770 ~ 13301322 (-) True LOC120564570
XM_039809684.1 mRNA upstream 18859 13273770 ~ 13301321 (-) False LOC120564570
XM_039809683.1 mRNA upstream 18859 13273770 ~ 13301321 (-) False LOC120564570
TU113814 other downstream 15981 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 1102530 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1358678 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2584398 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2814932 10427562 ~ 10432144 (-) True G83826
TU113910 other upstream 318920 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 776193 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 968339 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1247049 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 1711544 14966455 ~ 14967447 (-) False si:ch1073-390k14.1

Expression Profile