RNA id: XM_039809639.1


Basic Information

Item Value
RNA id XM_039809639.1
length 2153
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC120564547
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13325973 ~ 13385205 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagccagcaacttcgGCAGTAGagtttcggcgagctaaccacGACAGTATTGtcgcccacaatcaacctctgctgctaaaagcagtcaacctgcagtgatgtttgaaatggagacacacaTATCGTGCCTTTTCCCGGAGATCCTGGCCATTATTTTCAGTTATCTGGACGTTAAAGACAAAGGAAGAGTAGCCCAAGTGTGCGCGGCCTGGAGAGACGCGTCCTACCACAAGTCGGTGTGGAGGGGGGTGGAAGCCAAGCTACATCTGCGGCGAGCAAACCCGTCTCTGTTCCCCAGTCTGCAGACCAGGGGAATCAAAAAAGTTCAGATTCTCAGCTTAAGACGAAGTCTGAGCTACGTGATTCAAGGGATGCCGCACATCGAAAGCCTGAACTTGTGTGGATGTTTCAACCTCACAGACAACGGACTCGGACATGCCTTTGTGCAGGACATCCCATCCCTGCGGGTGCTGAACCTCAGTCTTTGTAAACAGATCACTGACTCCAGCCTGGGCAGGATTGCCCAGTACCTCAAAAACCTGGAGGTGCTTGAACTTGGGGGATGCAGCAATATCACAAACACCGGCCTGTTGCTCATTGCCTGGGGACTGCACAGACTTAAGAGCCTTAACCTGCGCAGCTGCAGGCATGTGTCCGATGTGGGCATTGGACACCTGTCTGGCATGACCCGCAGCGCAGCAGAAGGCTGCCTGTCTCTGGAGAAGTTAACCTTGCAGGACTGCCAGAAGCTGACTGACCTTTCTCTCAAACATGTCTCAAAGGGCCTAAACAAGCTCAAAGTGCTCAACCTCAGCTTCTGCGGAGGGATATCCGATGCAGGGATGATCCACCTGTCGCATATGACCCACCTGTGCAGCCTGAACCTGCGGTCGTGTGATAACATCAGTGATACAGGGATAATGCATCTGGCCATGGGCTCCCTCCGGCTGTCTGGACTCGATGTCTCCTTCTGTGACAAGATCGGAGACCAGAGCCTGGCTTACATCGCCCAGGGGTTGTACCAGCTCAAGTCCCTCTCTCTTTGCTCCTGCCATATCAGCGATGATGGCATTAACAGGATGGTACGCCAGATGCACGAACTCAAGACTCTCAACATTGGACAGTGTGTGAGGATCACAGACAAAGGGTTGGAGTTGATAGCTGATCACCTCACCCAGCTGACAGGGATTGATCTGTACGGTTGTACTAAGATCACCAAGAGGGGTCTGGAGAGGATAACGCAACTGCCGTGCCTTAAAGTGTTAAACCTGGGACTGTGGCAGATGACTGAGAGCGAGAGAGTGAGGTGAAGTCTCTTATTTAGTATACATGTGCTTCACTGTGTCTAGTGCTCAGTTGTGTACTGAAAGGGACTGCCTGTATCCACTCTTTATCTTACATTCTATACTGTGACTAAAAACAAGGAGATGGACTCCGCATTGATCACTGGAATATTGTTCACCTCCGCTGCAATACTCCACTCTAAATTTCAGTCTTATGCTCTCTTTTGATGTGCATTGTTTAATCTCAGCCTGTGTACAGTTCTTACTATCTAGCTACCTCACCCATCAAACACAGGAGTGCCTACAATCGCTGAATACTAGATTATTGCATATTTTTGTGACTCATGTACCAATGGAGAtttagatatttaaaaaaaaaaaaaatctcattgcaGAATAATAGCTAGTAGGCATTTTAATTCTTAACAGAAAGGCAAATTTtgatagtctttttttttttttgctgatgtATTTTTAACTTGTGTAACCAATATGTTTTGTATTGAGTGACTGTTGACAAAATTGTACTTCAAATTGAAGTGGGTGGATCTCtcctgtccgtctgtctgtttttgtttaccTGTGTATAATTGGCTATGTTTCATATTCCTGAGGAAATAAGTATGTATCAGATGTTCCAGTATGCTACTCTGTCAAAGGTTCATCAACACAACTACAGTAAGGTGTAGTAATTAACAGCTGCCAAGGCTATATGCAATACCTTTTTAAAACTGTTTTATCAGTGGTTTTTCTCCTGAGGAGCTTCCATCGATAGTCAgagtatttgtttaaaaaaaaagcagtaattTAAGATTGTTTTATATTCATACAGTAGTGATATTTATGAATAAAGATGGCAAATATGTTTCA

Function

GO:

id name namespace
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG:

id description
K10280 FBXL14; F-box and leucine-rich repeat protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113825 lncRNA downstream 715 13322182 ~ 13325258 (-) True G84536
TU113827 lncRNA downstream 1800 13322182 ~ 13324173 (-) False G84536
TU113809 lncRNA downstream 53444 13271252 ~ 13272529 (-) True G84528
TU113832 lncRNA downstream 76175 13246828 ~ 13249798 (-) False prr5a
TU113817 lncRNA downstream 89112 13236651 ~ 13236861 (-) True G84533
TU113907 lncRNA upstream 106614 13434739 ~ 13444612 (-) True G84585
TU113916 lncRNA upstream 316292 13644417 ~ 13644848 (-) True G84592
TU113923 lncRNA upstream 355699 13683824 ~ 13685469 (-) True G84597
TU114089 lncRNA upstream 744508 14072633 ~ 14072948 (-) True G84719
XR_005640108.1 lncRNA upstream 895072 14223197 ~ 14232530 (-) False LOC120564470
XM_039809681.1 mRNA downstream 24651 13273770 ~ 13301322 (-) False LOC120564570
XM_039809680.1 mRNA downstream 24651 13273770 ~ 13301322 (-) False LOC120564570
XM_039809677.1 mRNA downstream 24651 13273770 ~ 13301322 (-) True LOC120564570
XM_039809684.1 mRNA downstream 24652 13273770 ~ 13301321 (-) False LOC120564570
XM_039809683.1 mRNA downstream 24652 13273770 ~ 13301321 (-) False LOC120564570
XM_039808969.1 mRNA upstream 58616 13386741 ~ 13387986 (-) True LOC120564184
XM_039808132.1 mRNA upstream 81448 13409573 ~ 13426661 (-) False nfat5a
XM_039808131.1 mRNA upstream 81448 13409573 ~ 13426661 (-) False nfat5a
XM_039808133.1 mRNA upstream 81448 13409573 ~ 13419281 (-) False nfat5a
XM_039808134.1 mRNA upstream 81448 13409573 ~ 13419281 (-) True nfat5a
TU113814 other downstream 94878 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 1181427 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1437575 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2663295 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2893829 10427562 ~ 10432144 (-) True G83826
TU113910 other upstream 245706 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 702979 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 895125 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1173835 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 1638330 14966455 ~ 14967447 (-) False si:ch1073-390k14.1

Expression Profile