RNA id: TU113923


Basic Information

Item Value
RNA id TU113923
length 1646
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G84597
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13683824 ~ 13685469 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtcCAGGCAAATGTGTTGTATCACTGTCAGCTGCACTGTTTGTTTAGCCAAGGTCTTGAAATGATGGTCCAGTGGAAAGTATTTTCAGTTCATTGTAAATTAACCAGAAACCTCTGCGTGTTGTATCTGTCGGTTTGTGAGTTCTGTCAGATCCCGCGCCAGTGCTATTCCACCAGAAAGGACATTCTCAATTTTACTTTAgagattaaagctttagtgcataacttttacATATTAGTGAACGtcagttacattcaagccattgctaaatgagttgctacaaagctaattaggccaacagctccacaaaactctcgctgtatttctcagtatggctgtgttcataagattgtgtcgtccggcgaaACTAGAGTGAAGATGATTAccttttctgaagagtccatgttttgttttaatcctccgtgtcctccttgccttctagcaactgcatggaggaggggtgggggctgtgcGCGATCACAAGGCTTGCATCGTGTGGACGCACCAACagcgttgttgtcattacttataaTTCCTCATCGGAGAGACGGAAagtacgcactatagctttaaaaaggACCTAAATTAAATGTCTAAACATAACAAAACTACGAGATTTACTTTGAGATCAAGTTAACAAGTTTAGTGAGACAGGCCATGAGAAACTCATTATGGTAGATGTCAGTCTGATCAGTCCAAAATACATACTGATGCAGTGGACAGTTAGGAAGACATGTCTAGCTTAGAACAAGCACAGTGGGGAGGGAATTGTGCAGGAAAAGCTGTTTAGGGTCAGCGAGGGAATAAATGGCTCGCTGAGAAGGAAACGGGACTTAAAAGGCATTGCATTTTGGATACACTGCAGTTTTTGGTTGTTTATGGCTGTAACAAGTTTGCCGTTACAGTATGTGTAACGCTACATGTTCTTGCCCCAGACATTGATGCATtttgcaacaaaacaaaatgaatcttaaaaaaaaacatggtgatCTGATTCATGTACTGTAAGTCCCTTAATTGTCCGCTTCATTTCACTTCAACTTGTCCACACTATTCAAAGATGTTGTAATGACTGCAAACAAATAGATGGCCTCATCCCATTCCCTTGGCACTGACCCTGTATGTAAATATGCTGATTTAATACGGCCTGAACTCCCTGACAACAGTGAGGGTTTGTATTTCTTATGTGGGGGCCAaattagtgtttttttcttttcttttcttctaatGACCTCAGATCTATGCATGGCCCTATTACTGGCTGTATGATGTGGGAAAGCTGATTAAAAACCTGCTCTCTGTGCACCTTTTGTTCAGGCGTGTCAGAGGACGTGTGAGGGATCCACTCAGTGTCATTAACACATTGAAATCACCAGGCTTCGTTTAAGGATTATCTCCATCGCCTCTGTGTAACTGCATATATTAGCATGCCGATGTGAAAATCAAAGCAAGAGTGCAGCTTAATTGTTTTCTAGTGTATTACTCTccgatcctcctcttcctcactgctTTCCACTCCTTCTGCCCGTCTGTCCACAATGAGGTTTAGAGCCTTCAGCCATTCTGCTCCTCGCCTTTGGAACGCCCTCGCGCTATCCATCCGTACCATAGAGTCTCTACCCACATTTAAAACCTCCCTCAAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113916 lncRNA downstream 38976 13644417 ~ 13644848 (-) True G84592
TU113907 lncRNA downstream 239212 13434739 ~ 13444612 (-) True G84585
TU113867 lncRNA downstream 298619 13325986 ~ 13385205 (-) False LOC120564547
TU113825 lncRNA downstream 358566 13322182 ~ 13325258 (-) True G84536
TU113827 lncRNA downstream 359651 13322182 ~ 13324173 (-) False G84536
TU114089 lncRNA upstream 387164 14072633 ~ 14072948 (-) True G84719
XR_005640108.1 lncRNA upstream 537728 14223197 ~ 14232530 (-) False LOC120564470
TU114136 lncRNA upstream 537781 14223250 ~ 14236952 (-) True LOC120564470
TU114142 lncRNA upstream 537781 14223250 ~ 14236952 (-) False LOC120564470
TU114147 lncRNA upstream 552113 14237582 ~ 14238451 (-) True G84751
XM_039809916.1 mRNA downstream 1587 13671956 ~ 13682237 (-) True si:dkey-234i14.6
XM_039807854.1 mRNA downstream 65038 13575102 ~ 13618786 (-) False mafb
XM_039807855.1 mRNA downstream 163087 13517683 ~ 13520737 (-) True LOC120563596
XM_039808131.1 mRNA downstream 257163 13409573 ~ 13426661 (-) False nfat5a
XM_039809652.1 mRNA upstream 729 13686198 ~ 13693332 (-) False prpf18
XM_039809651.1 mRNA upstream 729 13686198 ~ 13693332 (-) True prpf18
XM_039807977.1 mRNA upstream 24517 13709986 ~ 13722388 (-) True cpt1b
XM_039807980.1 mRNA upstream 37314 13722783 ~ 13726359 (-) True LOC120563649
XM_039807981.1 mRNA upstream 37314 13722783 ~ 13726357 (-) False LOC120563649
TU113910 other downstream 65928 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 452729 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 1539278 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1795426 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 3021146 10644032 ~ 10662678 (-) False scamp2
TU114030 other upstream 345635 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 537781 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 816491 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 1280986 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 1380570 15066039 ~ 15073350 (-) True G85014

Expression Profile