RNA id: TU114030


Basic Information

Item Value
RNA id TU114030
length 1809
RNA type TUCP
GC content 0.41
exon number 4
gene id zgc:77752
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14031104 ~ 14037716 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCTTGTCTTTTTAAAGTTGTGCAGAAATCCACATAATCCAGGCCCAACCTCAGTTGCCCGTGCTGTTGCTAATGCAATGGCAGATTTTGGTCCTCCAGGAGAAACCATCCTTCAAAGATCGGCTCTGCTGCAGGAGGAATTGAACAGTAGTGACTGTGGCTGGGCTCTGCTGGTCACCGAGTCAGATCCTCAGGTTCTCAGTTGTCTGTTGTGGACCTGGCTGGACAAGTTAAAGGTCAGTGGTATCTAACAAGAGGACATAATTCTAGTATTGTCAACTTGTCCGGGGCgctgtgaagtaaaaaaaataaaatacatcttgACGTTTTGAATTTCAGTTTTCACTTCTGTGGTAAACATCTTTCTCTCAGTCCGATCTCTGTTTCTTCCAACCTCATCCAGGAGCCTGTTCTGGGTGCAGAGGATGTAGACAGGTTGAGCTGTGGCGCAAACAACAGGAAGCCTCTCAATGTGCTCAAGAAGccacagagacacacaatctATTGTCTACTGAGCTGTATGAGCACAGTGACCAGCCTGTGTCCACACAGAGAGGATGCAATGCTGCAACAACTGATGAAGGCACTAACAAGGCGTCCACGGGAGGAAATGAGAAGCCTTGCAACTTTAATGAAGGTCCTGAAGTCGAGTTTGAGAGAAACCTTCCACAACTAAATCTACCTCCCGAGGGCCTGAGGCACCAATGCTACACTTTGAAGAGCAGAATCCATATTGGAACAATTTCTAACAGagcattttttaatttaaaagaaggTGTTATTTTATCCTCTGCACCCGATAGTGGGCAAAACCATGTGTAATAGGCCCTTCttacagaagacattttgacatgtcacagtaggaaacaCAGGTGTACataatacataaaatatattatgaccatttagctgctttagATTCAGGATCCTGGACTGTCACACTTCTGGGATACTTGAGGAGAACAGAGCCATGGTAAatattattagtaacaccttTGTGCTTCTGCTCTTTCCCTACTATGACCGGTTAagatgtctgctgtgaaaaaaggaaGATTAGGAAGGTTCCTAAATCTTTTTGTAGCCCTGAAATTTGGCTCCTGGATTCCCCCGATCTTACTGATAGTGATACTGACATCTTCccttttacaaaatataaacCAAAAGTACACAATGGGTGTTAAATCAGCACCAACTGTCTCTATATGTTTCTCCATGGCActaaaatgttgtgtttgtgtagttTTTGCTCATACTTTCACACTTGACAACCACTCACTCACGGCAGTAAGAAGGGAACACAGGAAGTCCTATAGATTTTTGTCTTTACATCCCTATCCTTTTCAAGCATATATTGCCCTTTATGAGCAACTGGTACAAAGTCTTGTGTGGTCTTGTGTGGTTACAGTGGATAAGGAAGACTGATCCATTAAACCCAACCACATCATATTTGAACATGAATCCGTAAAAACTCAAAATaagcaataacaaaaacaaataaaaaaagtcaggtGGGTGCACTAATAGGAGAGGGAGGGACCCTAggcctaataaaaaataaaagggcAAGTCCTGCATACTGTGCTGAAACAGTGGTTAAAGCTACAGTAGATTTCAATAATGACACTGATACAAtgtttacttttactttgactgtttactgttactTTAAACAGTACCAGTATGTAAGCTACTGTACCTTAGTACTAGGCCAGCAGACTAAATCCAAAAAGTGTGTCCACAGTGTGTTCTGTGGCCTGTTTCAGCCTTTcatgataataataaataaatcatttacaTCATCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113923 lncRNA downstream 345635 13683824 ~ 13685469 (-) True G84597
TU113916 lncRNA downstream 386256 13644417 ~ 13644848 (-) True G84592
TU113907 lncRNA downstream 586492 13434739 ~ 13444612 (-) True G84585
TU113867 lncRNA downstream 645899 13325986 ~ 13385205 (-) False LOC120564547
TU113825 lncRNA downstream 705846 13322182 ~ 13325258 (-) True G84536
TU114089 lncRNA upstream 39418 14072633 ~ 14072948 (-) True G84719
XR_005640108.1 lncRNA upstream 189982 14223197 ~ 14232530 (-) False LOC120564470
TU114136 lncRNA upstream 190035 14223250 ~ 14236952 (-) True LOC120564470
TU114142 lncRNA upstream 190035 14223250 ~ 14236952 (-) False LOC120564470
TU114147 lncRNA upstream 204367 14237582 ~ 14238451 (-) True G84751
XM_039809212.1 mRNA downstream 109 14027898 ~ 14030995 (-) True odf3b
XM_039810069.1 mRNA downstream 4040 14022047 ~ 14027064 (-) True rabl2
XM_039808550.1 mRNA downstream 245353 13781377 ~ 13785751 (-) False arsa
XM_039808549.1 mRNA downstream 245353 13781377 ~ 13785751 (-) True arsa
XM_039808551.1 mRNA downstream 269771 13758290 ~ 13761333 (-) True LOC120563982
XM_039808313.1 mRNA upstream 6214 14039429 ~ 14046318 (-) True LOC120563866
XM_039808309.1 mRNA upstream 20737 14053952 ~ 14062743 (-) False neto2b
XM_039808308.1 mRNA upstream 20737 14053952 ~ 14062743 (-) True neto2b
XM_039808310.1 mRNA upstream 20737 14053952 ~ 14062493 (-) False neto2b
XM_039809703.1 mRNA upstream 45961 14079176 ~ 14090593 (-) False terb1
TU113910 other downstream 413208 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 800009 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 1886558 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 2142706 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 3368426 10644032 ~ 10662678 (-) False scamp2
TU114145 other upstream 190035 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 468745 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 933240 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 1032824 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 1445767 15478982 ~ 15483926 (-) True ttc23

Expression Profile