RNA id: XR_005640108.1


Basic Information

Item Value
RNA id XR_005640108.1
length 7233
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC120564470
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14223197 ~ 14236952 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTACACTCTAAATATCTGATTTTGTTAGACTTTACAGTAAAGTCCTCCTccagacacattttaaatgtttgttaaaaTACTCTGCTGTGATTGATCGTGCGCCAAAAAAACACTAGCAGACGTATCAGAATGGTTAGTGAGGTATATTAACATCCTACTTTATTCTGATCATTCTATAACTTGTATTTAGGTcatatctgaactatctatatgTAGCTAGAAGtgatgaactttagcctactttcagaagacacatCTGGAAAAGTGTTATCAATGGGGCCCTCCAGGACAGAgccagttggcatgaagccattggtcagttaTCGATCCCACAGCAATTCATGGAATAtacacatgtggcacacacacaaagaactttagagtgacttttgagaatctgaGAAGCGGTCCTCTCCGAGTTCTGCAGAgcttgtacatgatgctgatttctttgatgtaaataaacctttataatcaagaaacagtgtcgacGGATTCCTTTCCACCCAGCAATGCAGCATCGCTACAAAATACACCACATATTTGGCGTCACGAACTTCGGGCGAGTTGGGACCGCGGCCGCATCACTGGGGGGCTTCGACGGACTGACTTCCGCTTCCAAAGGCTAGCGAAAAGGGTGAGCATTTCTCGCAAGTTTGGGGCGTCAGTTAGTTCattgaggctgtgtgtgtgctgtctggtCGCACCGTTTCGGATCTGTGCGTGGGCCATGTTGTGATTGCTGTGTGGTTGGGACTCGGTTTTAAATTTGGTTTGCGTTGTGAGCCAACGCAAAAAGGGGGAAATAGAGGAAAAGTGAAGTAAAGTGGAGAACAGAGGATAATGTGTACTATAGCCTAATTAGTAACGGGTGAGCTAAAATAACCATGCGAGAGCGCAAAAATAAGCTAAAATAACCATGCGGGAGCGCAAAAATAAGCAAAAATAACCATGCAAGAGTGCAAAAATAAGCTAAAATAACCATGCGAGAGCGCAAAAATAGGCTTTAAGGAATCAcattggatttaaaaaaaaaaaaagagttgataACCCTGGCtagggaaatttgtcttggagaAGATAAAGGGAAATaagagaaaataaaggaaataaggGGAATAAGGAAATAAGGATAATAACGCCGTTAATTTGGTTAAAGACCTTGGATAAGGCGAGACTAGCTCAGGCCACAAAACCTGAAAATGACTAGGTGAAGTTTCAGGTCAGTTCTAGGAACTGGGGGTGTAGAATAAACTGCAATGGAAATTACGGATTTCATGGGTTGACGAATTTATGTCTGAAGTAATCTCGCATTGTAGTCTATACCTCAAAAGGTAACAGAAATTCAAGAAAAAGGAAACGGCGGAATCATGCTTTAGGAATTGTAGGCCTATAATGAATGCATTCTTGTTGCTGAATAACTAGTTTtcatgtgtgtatgagagacagagagtgtgtgtgagaacagCGGTGCCTCTGCGGTGTGTGATAGACTGTGTGTGCGTGGCTTATGTCATGATGATATTTTgttcattaaatatatatatatatacatatgaatATCTGTTTTGGTTGGGAACAGGAGTTTAAGTTACGATATTCTGGTTATTACGGTTAAAACTATGAGTCGTTTCCAAAGTTTGTTAAAGAGTGAGTCTTTTCTTGAGAGAACGTTTTTGAAAATCTGTTAAAACTATGAGTCCCCTTTGGAGCAGGGGCGTAGgcagaaatagtattttgggCGGGCCAGTACAAAAGTGGGTGGGCCATTTTCTAAAAGACGAAGTAGCAAAAAGgactaactgaaaaaaacagcaacgattttaccttccaacatactgcattacaacgaCAATAACAGTACTGTCTACAACATGCTcaaccaacaaagctctgtcTAAAAAGTTTGTACACAACAATATAGCCTAGACAAAAACCTGTAGATTGTAACATacggcagcaacagcagcattgGCTCTGCACAGCATTGGCTCTGCACAGCACAGTTATAAAATTAACCCTTTTATTGCTCAAAGTGGCAACTAAACATGAACCCACACAGCAGAGAAGGCATTTACATACTAGAGGACATAGAATAGCCTAGCTACATCAGACAGAAATCACACATGTAACAATGCAACAGCATTGTTGCTTCAGGACTATGGTCAGATCATGAGCAGCAAATGGctaccagcagtaaaagaaaatcaaagaatgaaaacttccagccaagcattgtttagctaaattatgaaagatataatgaaaagtggCCAGCCAGGTGCCAAATCTTAGACAGTGTATTAAGTCCACGGCAGTGACAGGGTcaaagaaaactcaaaactaGGTCACTCACAGAGAAGTTATACATTTACCATTTCTTACTAAAAATAGGAAGGTTACTAGGTTAGCTAGGTTACTtaattaataacacaagaaGCGTGAAAGACGTTTGACTTAATGTTACCTGTGTGAgggcctcctctctctctgatggGCTGTCAGCTCCGCTGGGGAAATGTCTGCACATACTGCAGAAAAGCTCGTCCTTATTTACACTGGATTCCATCcaagaaaactgtccataccaCTTTAAAGATAAGCCATTGTTGTCGCGGTAACGCTTTTAACAGTGCATTGCTTAACACATCCgtggtagctagctacgttgtctaaacagccagctagctaacgttagctgctgaaggcagcccggagagtctgcctgttgttaccatagcaaccaaCTACATTCCGAAGGCGTTTGATCTAGTAATTGTTTGATGGTTTGGTTtaaacagttttgttttaatcagaagaaaatacacattaaacacacagaactataatatatatagttgaatatttttcataacaaaacatattttgatcaaacttggctggacgggccagtgagtaaagtgggcgGGCCAGTGCCGCCCATTACTGCCTACGCCTCTGCTTTGGAGGGAACGTTTTTGAATGTGTTAAAATATATGAGCCTTCTGGAAGGACGTTATGATCTTATAGAGAAGATAtgttttagataaaaaaaaaaaaagtataggtTGGCAGATTAGGGTAAAAtaagtgaagaagaaaaagagagaaaatagacTATAGTCGAATTAAGAAGTTTCAAAGTAGGATttgtgttgtatgttttgtgttggtttgtgggttttgttttgtgttgctgAGTTGGGAGTGCGATTTTGGAGAACTTGTCACTCTGAAGTTGCACTGGCAACTGAAACTGCGCATGTCTAGAATTTAAGGAATGTTAGGGTCCACAGACGTTTAAGCCACTCCCTGCCTGCACTGGGGTGCTGCAGCCTGTGCTGCAAAGATAAGAAAGGGGGAGACTTTCAGACTTAGGTGCAGCTTGAGGTGCAGTATTCTGTTTGTTAAAGTAGCGGTTGTTTGACTATGAAACTATTTGATTGAGATCCATTGAATCTATAAATGAGAGTTGTGTTGACAgatataaagaaagaaaaatagaaaaatgtcataaaacatcTAGAAAAATGgtataataatttaaaatgtctttctaattAGGAAACCTTAACTATGCTTGCTTCtgaagcatgaaaagaaaaattggGAGAAAGATTTGAGGATAAAGTAGGCATAAACAAGGCTCAAgcctgaaggaaaaaaaaaaaaaaaaaaaggggaaggaaagaaagatatTAACAGCTGGCATAGGTGATTTGCATCTGGAACCCAGACCAGTGATTGATCACCCTGGAATAAGAAAATTCCAGCCTCTATACCTCTATTGGAAGtaagagatgagaggactgaTTGCTGGGCTCCAGGATTGTCACCTCTGCCATTCCAAAATGTTGGATCACTTGTTTTGAGTGGCGAGACATCTAAAAtgatttgactttgaataaaataattcaaaattCGACAATTTTATAAGGTTTTTGATTTTGCTTAAAGTTCTCCACTGTCACATATGGTCATGTCATTGTGCCAAGGAAATGAGTGACATTTGTGAAGGTGGGAAACAGAACAAATGAATCCGATTCCTGTGAAGAAACAGCGAGTTAATTCAATCTTAATGAAACATTAGACTGAGCTGGTTCATATACTTTGTATATTAAAGGGGTAACAATTGTTACAAAAGATAATTAGGAAAGTTGAGAGAAAATGGTAAGCATGTGTTGCAGAAAGGGAAAACAGAAAGGGAAAAGAAAGTTTTATGAGACAATGGAAAGAAAATAAGGCATAACTTTAAGGGAAAGTTAAGGGTACAAAAATGTACTAAGTTAgttaaagacagaaagagagtgttgtgaaagtgacagaaagacaaagaaagagattaatgtatttttgaatTAGGATAATGGGGTTCATATTAATATTGTTGGTACAGAGATAACTGCAGTATTTGGGCTACAATCTACAGGAGGGTAAACGTTTAGATGAGAGTGGTAAAAAATTGTTATATCACAAGCACCAAAACCTaggaaagagagacaaattaGGTAATTTTCAGGAATGACTAATGGTAATTTCCAAGACGAATTGCTTTTAGATATTATTGTGATCCGACATatcacaaattaaaaaaaagatttaggaTTTGTGTAGATGAAACATATGTTTatgaaatatgatgttttattattgttgGACTGCCCAACAAATACGCCTACAAGTTTGGTTGAAATGATTAGCTGCTTGAATACTTAGTTGATTGATACAACTACTGTGATCATTTCCAGTTTAAAATGTGGGGACTTTTCTGTGTtgttacttttagtacttgaagTACATATTTTATGATACTTCTCTTACTTAGGTaatatttttatagcaacatttTGAATCAATGGTGTCATAGGTTATAATGTAGAAAGAGAATTAAGAAAACCAAAATGAGTATGATTAAAGTAGGCTAATGCCTCTTGGAGGAGTTGTGCTTTGTGTTTATTCAGTGTGCCTCGATGGATGTCAGAGCGGACCTGTCTCACTCCCCCACCAAGCTACAGAACCAGTGACGGACAATACCAGACCCTGTACTACATGACCTCAATCCAACAGACACAATATTCAGCGTGCAACTTTGGTCCCATCCCCAACATACTGGCACCAGAAACACCTCTGGAGTTGGAGCAGCAGAAAAGGAGGGGTGACAGATTTGCAACTGCCCATGATTGAGTGGTTGAAGCAGACACCCAGATGGTTTTCAGGGCATGATCAGAGACTGACATTAAAGAAGCAATGTCATACATGCCCACAAAGTACTTTGTTGAACATTCACAGATGAAATGAAGTTTGAGGAGTTCAGCTCAACTTCACCTGGACTCAGAAGATGTATGATGCTGAAATTGATAAAGATCTTTACAGATCTGTTAGGCTGGGCTGCCTGGATTCAAGCGCAGATACGGAAAAAGGTCAGAACAGGTATTGAGGtttattgaacaaaaaaaatgagTGATGCAGGTGCTGGATATCCCCTGGGGCTGAGAGCGGGCAGACAGGTGAGAAGCAGGATCGAGAGAAGAACAAGTGAGGAGCAAACTGGAAGAGGTGGTTGTACTTGGAAGCATGGCAAAAAATGTCTATGCAGATCATGTAGCTCACCAAGTAGAGCTATATAGGAAAAaggaacatgagcagaaagaacaagacCGAGAAACTCCCAGAAAACCCAATCGAATGCAGCTGGAGAAAGATAAGGACAGGAAGGACAAGAAGCAGGCACTGGTTATGCAAAATCAGTGTTCACCAAATCAACAGTCACCATTAGTGATTCCAGTTATTATATACCCACAGCTAGCTTCTGGACAGATACAGAactggagaggaagaggaagaggacgagCTGGAAGATATGATCCATATTTTATATCTTCACAAGCGTGTTTCAATTGTGGACAGGATGGACACTTTTCCCGTGATTGCAATATACCAGGATGGAATCCTAGAGGAAATTACAGAAGAGGATTCAGGGGCCAGTTAAGGCCAATTGGAGGACCGATGAACCCTCACAGGGGTCTGGAGCCAGGATTCTAGAGGTGCCCAGAAGATCTGAAAGGAGGTGTCATCAGGCCCGGAAAGAGATCCAACAATTGAGGACAAGGACAGTCACAAGTTGGTATAGATCCCCACAGATGAGCGTGGACATCTGCAGATTGACCAgagaaggaggggagagagaccgGATTTGCTCTGGCGCACATCAACGCATAACGACGAATAGAAAAAGCATATCGGGTAAATACTtgaatatggacaataaaaatGGACTGGAGGATTTTGAACAAGGATACAGTGATGAAATGTTCAGATTCCATCGACGCTACATTGAACGTTCGACACTGCGAAGGAGATGCAGTGGATATATTCTTTGTGTCATATTCATTTTGTATTAAAACTGTTTGAAGAAGAATGTTTTGTTGTGGGATGCACATGGAGAcctcagatgtttttatgtttttcttgacGCTTAGGGACAGCGGGGTCTAGGTAAGGCGAGGTCCTTTTACAGATCCGATGATTTGATCAGTCTAAATTGGgactttgttttgattttattttgatttctgaggctgtCATATGTATTCGATTACACCAAGACATTACATGAATTgataaaaagatttttaattgatCTGGAGTACTGAAGGTGGTCGCCTGGGGCAGAGGGGCCGTGAGAGAATTTCTGTCTGCCGGACAGGTTTTTCACTCTTACACtccataaaatgtttgtttacacttCCTAGAAATTGTTCACACTCTATGAAAACTTGTGTTATTGCTAAGGTTATACTACAAGAAACATGATGTAATGGAGAGTGTTATTTTGTACCAATCTTACTCCTTTTTGTTTCGAGACTTAATTAGTCTAAGGGGGGAAATGAGGTATATTAACATCCTACTTTATTCTGATCATTCTATAACTTGTATTTAGGTcatatctgaactatctatatgTAGCTAGAAGtgatgaactttagcctactttcagaagacacatCTGGAAAAGTGTTATCAATGGGGCCCTCCAGGACAGAgccagttggcatgaagccattggtcagttaTTGATCCCACCCCAATTCATGGAATAtacacatgtggcacacacacaaagaactttagagtgacttttgagaatctgaGAAGCGGTCCTCTCCGAGTTCTGCAGAgcttgtacatgatgctgatttctttgatgtaaataaacctttataatcaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114089 lncRNA downstream 150249 14072633 ~ 14072948 (-) True G84719
TU113923 lncRNA downstream 537728 13683824 ~ 13685469 (-) True G84597
TU113916 lncRNA downstream 578349 13644417 ~ 13644848 (-) True G84592
TU113907 lncRNA downstream 778585 13434739 ~ 13444612 (-) True G84585
TU113867 lncRNA downstream 837992 13325986 ~ 13385205 (-) False LOC120564547
TU114147 lncRNA upstream 5052 14237582 ~ 14238451 (-) True G84751
TU114148 lncRNA upstream 7991 14240521 ~ 14241054 (-) True G84752
TU114158 lncRNA upstream 30173 14262703 ~ 14263115 (-) True G84760
TU114159 lncRNA upstream 30886 14263416 ~ 14263741 (-) True G84761
TU114161 lncRNA upstream 32195 14264725 ~ 14264986 (-) True G84762
XM_039809479.1 mRNA downstream 25074 14110466 ~ 14198123 (-) False frmd4a
XM_039809470.1 mRNA downstream 38510 14110466 ~ 14184687 (-) False frmd4a
XM_039809484.1 mRNA downstream 38510 14110466 ~ 14184687 (-) False frmd4a
XM_039809471.1 mRNA downstream 38791 14110466 ~ 14184406 (-) False frmd4a
XM_039809469.1 mRNA downstream 38791 14110466 ~ 14184406 (-) False frmd4a
XM_039809826.1 mRNA upstream 12690 14245220 ~ 14251969 (-) False LOC120564658
XM_039809825.1 mRNA upstream 12690 14245220 ~ 14251968 (-) True LOC120564658
XM_039809531.1 mRNA upstream 41099 14273629 ~ 14274893 (-) True LOC120564497
XM_039809530.1 mRNA upstream 41775 14274305 ~ 14276077 (-) False LOC120564497
XM_039809493.1 mRNA upstream 230829 14463359 ~ 14480786 (-) False LOC120564472
TU114030 other downstream 189982 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 605301 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 992102 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 2078651 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 2334799 11888027 ~ 11888398 (-) True G84083
TU114408 other upstream 269430 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 733925 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 833509 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 1246452 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 1282248 15514778 ~ 15544082 (-) True G85133

Expression Profile