RNA id: XM_039808182.1


Basic Information

Item Value
RNA id XM_039808182.1
length 5127
RNA type mRNA
GC content 0.44
exon number 40
gene id LOC120563775
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14501896 ~ 14558228 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCTGAAAAACCAGCACCTGTACAGTGTTGAGCAAAACGACGCAGAGGAGCTGGTGGCCAGAGCAGCCACGAAAATTGAACAGCTGCTGCGGAAGAGATCTGCTGCCTTGGAGAAACTGGCCACAGCTGCCGAGAATTTCCAGATGCAGCATAACTGGAAAGATGAGTTTGAGGGTGATGAAATCTCCTACTACAATGCAAAGGACAATCTGGATGCAAATGAGACAGAGGGAAGAAAATACAGGATTCGACCAGACTTTATAGAGGATCCATCATTTAAACGTTTGACTGATCACAACCACACGGCTGTCCACATCCCCACTGACATCTATGATGGCtCCACCATTGTGCTGAATGAACTGAACTGGTCGGAGGCACTGGAGGACGTGTTTAGGAAGAACAGAGAGGATGACCCAACCCTTCTCTGGCAGGTGTATGGTAGCGCTACGGGCCTGGCTCGCTACTACCCagCTTCTCCCTGGATGGATGCTCGCAAGACCCCAAGTAAAATTGATCTGTATGATGTCCGCAGGAGGCCATGGTACATTCAAGGAGCTGCCTCACCCAAAGATATGCTAATCCTTGTGGATGCaagCGGGAGTGTGTCTGGCTTGACTCTCAAACTGATCAGGACCTCCGTCAGTGAGATGCTGGAGACTCTGTCTGATGATGACTATGTCAATGTAGTTTACTTTAACACCAGGGTGAAGAAGACGGCGTGTTTCGACCATCTGGTTCAAGCCAATGTGAGGAACAAGAAGGTGCTGAAGGATGCTGTTCAGAACATCACAGCTAAAGGAATTACAAACTACACAAAAGGCTTTGAGTTTGCTTTTGAGCAACTCTCTACAacgAATGTGAGTAGAGCAAACTGCAACAAGATCATCATGCTGTTTACTgacggaggagaggaaagagctCAGGCCATACTGGAGAAGTACAATGCTGACAAAAAGGTGAGGATCTTCACCTTCTCAGTAGGACAGCACAACTATGATAAAGGACCCATTCAGTGGATGGCCTGTTCCAACAAAGGTTACTTCTATGAGATTCCTTCCATCGGAGCCATCAGAATAAACACACAGGAGTACCTGGATGTCCTAGGCAGACCAATGGTTTTGGCAGACAAGCAGGCCAAACAAGTCCAGTGGACTAATGTTTACCTTGATGCTTTGCAACTGGGTCTGGTCATCACTGGGACACTACCTGTCTTCAATAAAACGAAGACCAAAGATGACAGGAATGGCGAGCACCAGAATCAGTTGATTCTTGGCGTAATGGGGATTGACGTGTCTCTGGATGACATCAAGAAGCTCACACCACGCTTCACAATTGGTCCAAATGGATACTACTTTGCCATTGATCCCAATGGATATGTCCTGCTGCACCCCAATCTCCAGCCAAAGGAAAGAATTCGTAACAGGAAGCTCAGGCTAAATAATAAGTATGCTGTCACTTTTCACGAGGAACCAGTTACCCTAGACTTCCTGGATGCTGAGCTGGAGAATGACATCAAAGTGGAGATCAGAAGAATGATGATCGATGGTGAGACAGGCGAACGCACCATTGACACTCTGGTGAAAACTCAGGATGAGAGGTACATCGATAGAGGATCCCGGACCTACACGTTTGCCCCGGTCAATGGAACAGATTACAGCCTGGCTCTTGCTCTGCCTCCATACAGTGAACACTTCATTCAAGCTAAACTGGGGGACAACATGAAAAAAGCTATGTCTTCTTCTTGGGGGCAAGAAGccATGGAAACCATACAGCAGGAGAGGTTTGATGAGTTTGGTTACACCTACATCGCTCCAAGGGCATACTGCAAAGAGCTGAAGTTGTCACTCAACAACACCCAGTTTCTCCTCGACTTCAGCCAGTACATTGATAGGAACACTCCAGATGCATGTAATGTTTCCCTGGTGAATCGACTAATCCTGGATGCAGGTCTGACAGCTGAACTGGTTAAACTTTGGAATGAGCAGACAGTGGATGGGATAGTGGCCAGGTTTGTAGCCACAGATGGAGGAATCACAAGAGTCTATCCAAGAAGTGCTGGGGAAGAGTGGACTGAGAATCCTGAGACATATGAGTCCAGCTTCTACAAAAGGACCCTGGACAATGAAATTTATATTTTCACAGCTCCGTCTTTCAACCCAGAAAGCAGGGAGCCTGTTTCTGACTCAGGTATTCTAGTGAGCAAAGCAGTGGACATCACGATTGACAAAGTCACGCTCAAACCAGCTGTGGTTGGAGTGAAACTCAATATCTCATTCTGGATGAACAGTTTCATGAATGCTACAATGAAACTTAATTGCAAGGATGAGATCTGTGGCTGTCTGAGGAATGACAAGCATGTAGACTGTGTGATCCTGGATGATGGGGGATTTCTTCTCATGTCCAACCAGGATGAGTATATCTCCCTGATAGGTCAGTTCTTTGGCGAGGTGGACCCTGTGCTGATGATCAACCTGGTCAACACCTCCCTGTACTCCTTCAACAAGACCTACGACTACCAGTCTGTCTGCGACCCAGAGAAAGACAGCAAGGCCGCAGCAGGACCCCGCTCCGTCTATGTGCCTACCATTGCAGACCTGCTCAGTATTGGCTGGTGGGCCTCCACTGCTGCCTGGTCGATACTCCAGCAGCTCTTCTTTGGTCTCATGTTCCCCAACCTTCTAGAGGCAGCGGAGTCAGCAGATGATGACATACCAGATGCCATGTTTAAGGAAAGCTGCATCACAGAGCAGACTCAGTACTTCTTTGACAATGATGAAAGATCCTACTCAGGTGTCCTGGACTGTGGAAACTGTTCCAGGATGTACCGTGCCGAGAAGCTGCCAAACACCAACCTAGTGTTCCTGATCACTGATGCCAAGGCAACGTGTTTGTCGTGTGACCCAAGGCCGCTTCGACAGGCTGAACAACCCTCTGAAGGTCCAGATCCATGCGAACTGGCTCAGTATCCCAGATATCGCAAAGGGCCGGACGTGTGTTTCGACAACAATGAAAACGATGAGCCCTTGTGTCCAATCAGCAGAGGTTCTACATTGAGCACCACACCTCTCTTATTGTTTCTGGTGCTGAGTTCAGGGAGGATGATTCTGACTGTGGAGGTGGGACCTGCTTAAGCCCGTGTCTTTGGCCAGTGCTTGGGCTCCAACTACTGCTGCTGTGGCTTGTCACATCTTTACAACACTCATGACcctacacatagacacacacatacacacacacactcatacacttACACACTGATCATCATCTCATCAAACAAGATGCCAGAAAACACTCCAGTTATGCCATCCAGGATGTATGAAAAGTATTTGCAACAAGACATTTCATTTTCTGACGACAGTATGAGCATTTCCATTTTCCAATGCCAAAGGTTGCTCATTCATTTCCTCCTTGTCATCTTCAAAAATAGAGACACATTTACTGTGCTCAGCTGCACTCAGTTCCATGATATACTCCTTTATACTCTCTTATGGTGCAAGAGTAAGAGCTAACCAAACCCTTTAATTCTGCCTCATTTGTTTCTCTGATTTATTAAGCGGAGGTTGAAGAGTCCCACTATGCCAACTAAATATCATTCAAAGACTGTATGTTCACTGACAGCATTGATTTGTGTAGTTGTCGATATTGTTTGTTGCTTATTATACTTATTGCGTATGAATCATTATGCTgtaatgattgtttatttttgccAACCAGTGCAACTATGAAGAATATCCcttttgtttaaatgttttttaaatgtactgtacCTATTTAAATCTTTTGTACTCAAAATCAACTAGCATTACATGACAAGCTAGGTGTTGTATTGTAGCAGCATGTGCTCAGTACAGAGCTAAATACAACACCAGTACTCTGACACCAAAGCTCACACAGTACCAAGGACCACAGATACAAAGCTACTAGAGAATCTTCAGGCTAGTTTATTTTAAGTGATTCCTCACATGTGGATGTACTCCAGTATTAAAGTTACAACATTAGCTAGATAAGTAAGACGGATAGCTTAGACACCTCGCTGAGAATTAAGTGAGATCATGTGAATCAAAATCTATTAGGATATTACAATTTCAAATATGTTTGTACTTGGTCTGACAGCTTTGGTTGTCTTCAATTTGATGCATCAAATTCCCAGTGCCTACATAGTAGTTATCTGAATGAAACAATGAGTCAGAGTTGTATTCTTACCATGTACGCGTGTATGCTAATGCTTTCTGCAGTATAGCAGAGCGGGTAGTAGTAAGTTTTGAATTGGGCCAAAACTGCTGCAGTTCTTCTAATTTATTTGGTCAAGACCTCAGTAGAAACAACCAGTGATTTTGATTGTAGTAGAGGAATATCATGTTCCTCCATGGTCAAAACAAACCTAAACCAGACTTGAGCTTTGCGTTCCAACACCTCTCTCTTTTAGTCCTGTTTCTGTTCCCTTTCTGGATCGCCAAGATGACTTGTGAATGAGATCAGCATATCAAAATGACTGTTTCTTTATATTCTTCTTCTTGCTGTTCTCCTCCTTTTGCTTGTTTCCTCTTTGTTTTAGTGCTGTGAAGCAGACGCTGAGGGCTCGGTGTCGAAACGCTGCAATGTCATGGGATGAGCTTGTTCTGTGTTTGAACGCTGTCTATGCCTATGGTCAGCATTAGGGCCTGTTGGAGAGAACTTTGAGAATATACTACTACCAGTGGTAATTTTGCATTGCCATAAGTCATAGAAATCACACTTAAGTGTtacatttttcctcttttttagCTATTTTAACAATTAAAATTGAGTTCTCTCCACCTCGCCTTCATGTTGACCTTGTTGAGTGTTCAGGTTATGCCTGTCTATCAAAGTTGTGTGTTGACTTGTGTTTTACCAAGGGGATCCCGTGTCTATGTGCAGGCATGTGTGTGCCCCTCTGATATCTGATTGTGCTTTAATACTGTACATGAATTACTCTTTTGTGGAACTTGACTAGCCTgaatacattttgtatacatttgtacACTAAtaatatttactgtataaaagagaaaaatgaaagaaaagaaaaatgtttataATATGGTGTTGATTATTGTGCAAATATAATATATTCACAATAAAAGTGTTGTATTGTTATGACCTGA

Function

GO: NA

KEGG:

id description
K04858 CACNA2D1; voltage-dependent calcium channel alpha-2/delta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114175 lncRNA downstream 136498 14365192 ~ 14365398 (-) True G84776
XR_005640087.1 lncRNA downstream 216934 14283896 ~ 14284962 (-) True LOC120564348
TU114161 lncRNA downstream 236910 14264725 ~ 14264986 (-) True G84762
TU114159 lncRNA downstream 238155 14263416 ~ 14263741 (-) True G84761
TU114158 lncRNA downstream 238781 14262703 ~ 14263115 (-) True G84760
TU114412 lncRNA upstream 230 14558458 ~ 14567269 (-) True G84960
XR_005640144.1 lncRNA upstream 249183 14807411 ~ 14808068 (-) True LOC120564774
TU114433 lncRNA upstream 293492 14851720 ~ 14852023 (-) True G84971
TU114375 lncRNA upstream 395900 14954128 ~ 14955407 (-) True G84948
TU114376 lncRNA upstream 395900 14954128 ~ 14955407 (-) False G84948
XM_039809493.1 mRNA downstream 21110 14463359 ~ 14480786 (-) False LOC120564472
XM_039809492.1 mRNA downstream 21110 14463359 ~ 14480786 (-) True LOC120564472
XM_039809530.1 mRNA downstream 225819 14274305 ~ 14276077 (-) False LOC120564497
XM_039809531.1 mRNA downstream 227003 14273629 ~ 14274893 (-) True LOC120564497
XM_039809826.1 mRNA downstream 249927 14245220 ~ 14251969 (-) False LOC120564658
XM_039807761.1 mRNA upstream 14503 14572731 ~ 14617358 (-) False LOC120563540
XM_039807760.1 mRNA upstream 14503 14572731 ~ 14617358 (-) False LOC120563540
XM_039807759.1 mRNA upstream 14503 14572731 ~ 14617358 (-) True LOC120563540
XM_039808184.1 mRNA upstream 59063 14617291 ~ 14632303 (-) True LOC120563776
XM_039808787.1 mRNA upstream 84610 14642838 ~ 14667500 (-) False sema3e
TU114145 other downstream 264944 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 468681 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 884000 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 1270801 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 2357350 12141523 ~ 12144546 (-) True G84123
TU114449 other upstream 408227 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 507811 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 920754 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 956550 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1881146 16439374 ~ 16440965 (-) True G85321

Expression Profile