RNA id: TU114412



Basic Information


Item Value
RNA id TU114412
length 296
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G84960
representative True

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14558458 ~ 14567269 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCGGGATGGCCGGGTGCTCAGATTAGAGGTGTCAGGGTTCGTTAATCTGTGAGGGAGCGACAGACTGCCACTCACGCTGCTTCTGCACACCGCTCCCATTCATCGGCGGCGAAGGGGAGCGGAGCACATTTGGTGTTGACGCGCGTCGGGGAATTTCCCCCCTCTTTTTACAATGAATACCTGCAGGGTACATGCCTGGGTGTTTCTGGTCCTATTATGGCACAACGGGACTTTGGCATCGCAGTTTCCCACACAGCTCATGATTAAAGAATGGGTTGATCAGATACAGAAAGAGC

Function


GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism
ko00830 Retinol metabolism
ko04916 Melanogenesis

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114175 lncRNA downstream 193060 14365192 ~ 14365398 (-) True G84776
XR_005640087.1 lncRNA downstream 273496 14283896 ~ 14284962 (-) True LOC120564348
TU114161 lncRNA downstream 293472 14264725 ~ 14264986 (-) True G84762
TU114159 lncRNA downstream 294717 14263416 ~ 14263741 (-) True G84761
TU114158 lncRNA downstream 295343 14262703 ~ 14263115 (-) True G84760
XR_005640144.1 lncRNA upstream 240142 14807411 ~ 14808068 (-) True LOC120564774
TU114433 lncRNA upstream 284451 14851720 ~ 14852023 (-) True G84971
TU114375 lncRNA upstream 386859 14954128 ~ 14955407 (-) True G84948
TU114376 lncRNA upstream 386859 14954128 ~ 14955407 (-) False G84948
TU114472 lncRNA upstream 490456 15057725 ~ 15057929 (-) True G85007
XM_039808182.1 mRNA downstream 230 14501896 ~ 14558228 (-) True LOC120563775
XM_039809493.1 mRNA downstream 77672 14463359 ~ 14480786 (-) False LOC120564472
XM_039809492.1 mRNA downstream 77672 14463359 ~ 14480786 (-) True LOC120564472
XM_039809530.1 mRNA downstream 282381 14274305 ~ 14276077 (-) False LOC120564497
XM_039809531.1 mRNA downstream 283565 14273629 ~ 14274893 (-) True LOC120564497
XM_039807761.1 mRNA upstream 5462 14572731 ~ 14617358 (-) False LOC120563540
XM_039807760.1 mRNA upstream 5462 14572731 ~ 14617358 (-) False LOC120563540
XM_039807759.1 mRNA upstream 5462 14572731 ~ 14617358 (-) True LOC120563540
XM_039808184.1 mRNA upstream 50022 14617291 ~ 14632303 (-) True LOC120563776
XM_039808787.1 mRNA upstream 75569 14642838 ~ 14667500 (-) False sema3e
TU114408 other downstream 51257 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 321506 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 525243 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 940562 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 1327363 13230617 ~ 13231095 (-) True G84530
TU114449 other upstream 399186 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 498770 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 911713 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 947509 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1872105 16439374 ~ 16440965 (-) True G85321

Expression Profile