RNA id: TU114449



Basic Information


Item Value
RNA id TU114449
length 521
RNA type TUCP
GC content 0.48
exon number 2
gene id si:ch1073-390k14.1
representative False

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14961860 ~ 14967783 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGCAACTTAAATGGCTAAACTGAAGATGATGAACTGGAACTTGCATTGGCTCTCTCTCTACTGGAAATGAAAGATCACCAGCTGTCAACCCCCAGCCAACAGTCCCGACTACAGCAACCTGGAGACAGACCGAATCAGAGATGCTCTGTTCAACTGAATTCTGTATCTCAGCCTCAGGGAAGCAGCCACGCCCAGCTAGCAGATGTAGAAAACACAAACTCACCACAAACTGGAGCCTGGGTCAAGGCGGGCCCACCACAGACAACCCAAGAAACTGAGCCTCAGAAAAGCACATATGTTGACAAATATAAAAGTGAGACACTAGGGACAAGTCAGACTGTTTGTGTCTCCAGACTGTCTGGCTTATTTTCCAAGCAAGACACGGTTGAAGAAGGTGACCAAATGATGGATGAGGGAGATTTGAATCAAACAGAGAAACTAAAGCGCTCTAAGAAGAGGCGACAGCGGCGTAAAGGTGCTGGCCAGCAGGTTGTAGGTTTGCCGTGTTCTCCATCAGCACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114375 lncRNA downstream 11048 14954128 ~ 14955407 (-) True G84948
TU114376 lncRNA downstream 11048 14954128 ~ 14955407 (-) False G84948
TU114433 lncRNA downstream 114432 14851720 ~ 14852023 (-) True G84971
XR_005640144.1 lncRNA downstream 158387 14807411 ~ 14808068 (-) True LOC120564774
TU114412 lncRNA downstream 399186 14558458 ~ 14567269 (-) True G84960
TU114472 lncRNA upstream 90278 15057725 ~ 15057929 (-) True G85007
TU114476 lncRNA upstream 95164 15062611 ~ 15063137 (-) True G85011
TU114507 lncRNA upstream 210893 15178340 ~ 15179173 (-) True G85027
TU114585 lncRNA upstream 394390 15361837 ~ 15363425 (-) True G85084
XR_005639985.1 lncRNA upstream 485762 15453209 ~ 15455514 (-) True LOC120563611
XM_039808414.1 mRNA downstream 47179 14903173 ~ 14919276 (-) True elapor2a
XM_039809864.1 mRNA downstream 171325 14757979 ~ 14795130 (-) True sema3d
XM_039809865.1 mRNA downstream 171326 14757979 ~ 14795129 (-) False sema3d
XM_039808785.1 mRNA downstream 258337 14683447 ~ 14708118 (-) True sema3ab
XM_039808787.1 mRNA downstream 298955 14642838 ~ 14667500 (-) False sema3e
XM_039808419.1 mRNA upstream 5834 14973281 ~ 14990514 (-) True LOC120563915
XM_039808420.1 mRNA upstream 36854 15004301 ~ 15012816 (-) True LOC120563916
XM_039808233.1 mRNA upstream 84403 15051850 ~ 15057130 (-) True dnaja2b
XM_039809927.1 mRNA upstream 131179 15098626 ~ 15105742 (-) True lmf2a
XM_039809926.1 mRNA upstream 138624 15106071 ~ 15131264 (-) True c2cd5
TU114408 other downstream 459254 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 729503 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 933240 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 1348559 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 1735360 13230617 ~ 13231095 (-) True G84530
TU114482 other upstream 98592 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 511535 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 547331 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1471927 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 1797268 16764715 ~ 16764786 (-) True trnah-gug_10

Expression Profile