RNA id: TU114482


Basic Information

Item Value
RNA id TU114482
length 4207
RNA type TUCP
GC content 0.41
exon number 9
gene id G85014
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15066039 ~ 15073350 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTTGGTGTGACATATTTATTAGGTTCGTATTTGAATGTACAAGCTAAATTGACAACAGGAAACAGATACATTactctaaatgaaaaaaaagaaaagaaaaacaaaaccccCACCAGCATCAGTCCACTTTACAAAAAGGCATTTCACAACATGACTGTCTTTTGCACTTGCACTTCCCTCccgacacacatactgtacacacacacacaaatgtaatcaGCTATGATGCTAGAAAGATTTAAACTTTGAAATGGCCTCAGTGTAAGGTAACATACAATGGGATGAAGTAACAATTTAACACCCATTGTCTCTCAATTAAAGTTTTGGGCATACACTGTATAATACAGCACATGCCCTACGAGGTGAATGAGGCTAATGTGCAAACTTAATGGCACTTAAAGATGACTGTATTGTACCTCATGCCATTATGCATAACATCACACCTTACCCGTAGCTACACTGCACACGCACTACACTCTCaaggtggacacacacacacacacacacacacacacacacacacacacaaagggtcAGACGCAGTGCTTGGTTTGGTGAAAGACAGGATGACATATTCTGATCCTGTACATACCCTGACAGAAAAACAGCTCTGTTTTTCTCCTCTAACCCTGACTTAAACCAATGTTTACTCTCTGTGCAGCTCCACTTCAAACAGCTCAAAGTGCTGAACGGATAAAAGGAAAATATCTGTGATCTTAGATGAATCTTCAAAGTATTTCTTTGACATGCGTTATCCTCTCCTACTGCTGATAACTCCATCAcgactaaaaaaaacaaaaaaaaacaaacatgagagGAATCAAACAAAGACTGCTTTAGATACCCAAATCTAGACATGTGACACCATAGCAAGAAAGGAGGCTACTTCACAGATATGAAACCCAGTTGCAACACTGGTGGGAAGACACACTTTGGCAGAAAGCATTGAAGAAAAAGTATTCTAAAGTATCTACATAATTCACGCGTTCAAGTCAAACATTCCCACCTCTTTGAGTGGGGAATAATGTGGTGGCACTTGGCACCACCAAATACAAACCAAAAGTGCTTCTTGAAAAAGtgcttttaaaacaaatacaacaatcTATGTTTATTGTTCCATAGGCATATATGCAATTAAAGTCAACTCCTGccctgagaaagagagagctgaGGAGAAGGATAAAGTAAAGCATGACTGTCTGGCACATGCTAACTTAAAGGATAATTctggtttattacaacttgggtcTTGTTTTTGCCATGATTTCTATCCCTTATGTAAGATGATTATACTCAACAGTTGAATGTTAATAACATAAAGACCGAAGAGAGGCAATCAAACTGGTTTTAAACAAGCCAGTCAGATTATCTAAACCAATTTAATGTGAGGCAAACATGAATGTGTGCTCATCCAAATGTTGATAGTATGGCTCCCATgtacgattattttcattattgattaatcggACGAGTATTGTACTGATTAAAACAATTCATCGTTTGGTCTAAAAAAAGGTCAGGAAATAGTAAAAAATATCCAGCCAAAAGTGATGCCATCAAATTCTTTATGTTTGATTAACAGTCCAAAGACATTGTTAATTATACATTAGACAAAAAAAGCTGCAAATTGAGAAAATGAAACAGTAGTTACAATAGTTACCTAATATTTTTGTGTCAATCAACTATTGGATTAATCAACTCTAGTTGATAATAATCCCTCATTACATGGGAAAGGTATGTGCACATACGTAATATGATAAAGCATATGAGTTGAAGCAGTAGTTCTGGTATTATTTTAATGTTCACCTTCGTTTTTTTCTTCCTAATAAGATTGGTTAGACTAGTATTTTGTTTAAAActgatgaatgaaaaaaaaagacccaaATTCTAATAAACCGGTATGATCCTTTAAGTAAGTAATACAGAGGACACACCGCAGACTACCGACTCACATTCACGCACACTCCCAAACCTCTATGTAGGAAGCATGTAGCAAAGGAACAGGAACTGATGCTGGGGTATTAACCGAAACACAGACATCATTATTGCCTCATTTCaacagtacaacacacacatacaatacacacgTTGCAACCTGCAAAACAACCGCCTTTCCATACATTGGATTTATTCCAAAAATAGATATAATGTTTATATATACTGTTTACATTTATATTACGTTTACATATTACCAAGAATAGCCACAACCTAATACAGGTTTAAATTTCACAAATATTACATTAAACAGCTCTGAGGGTGATATGAATTAGTATGTGcacatcagtgttttttttgcatgtgtgtatacatgtgtgtatagCACTGTGTgcgtgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgacacaggtGTGCTTTCTTTGTATCTGCATACCTCTCCTTTGACCTGAAGATGCACGCTGTACCTCAGACAgagcttaaacacacacacacacacacacacacgtctacaCACATGGatacaacagcacacacacctcTAAACTACCGGAATCAGAGGTTTGAGGAGGAAGTGACACATAATGCTCTATAATCTGATGCTCCAAATTAACAAAAAGAGAGCATTTATGTTCCACATGATCAAAGCAAAGAAATCTTACTTGGACTGAAAAATTATTCCAGTAGCATgtatgaagaaaagaaaaaaaagccacatTTTTAATCACTCACACATTTGCACTAATGAAATGTCTGCCTGGCATGTACATTGAAATGCTGAAGAGAAAATGGTGGCTAGCTTTGCAAGCATCTTGGCTTTTGTAATCTTGGCTGATTATTTGAATACAGTCTTATTTACTAAAGTGTAAACAGTCAAAAGCTctaatagaaagaaaaaaaatctctggaCAGTGATTTAGTGCCCAGACATGCTTAAACAATCTGAAATTTGATGCTGAAGGTCAAATTTCAGACCTAGGTATTTGTCTTCTTGAAGTGCAACAGCTGGCACTCAAACTTTTAGTGTAACCTCTGCTCATCACAATAGGTAAGAGTGTCGTCACTCTCCTAAGTCCAATGGGAAAATCATACAGAATTTGGCTTTGGGGTCTGGTACGATGACATGTTCTTTAAAACACACATTCCTCTTTGAAGCGGTTCACTTGTAATTATGTCATGAAGGTGCAGGAGAGATCAATGTACCTATGTGTAGTTATGTGTTATCCAGCATTCATACTGTTAAGGGCTGTTTGACCTCAACACTGAGCATCTTCAATTCTTTGGACACAAAAAAGGGCATTGGAGGGCTGCTAACAGGAAGCAAAGGTGGCATTGCTGTGTGTTGAATGGACAGGTATgtagcgcgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgcctgtgctgcATCGTTAAGCCGGTCCATTAACAGAGGGCTGCGTCTCTtgtGTGACAGCAGCCGACTGCTTAGTTGGACTGGTGGTAGTTGGGTTGGGACAGTCttcatgtttctttttcttttcgcTTTCTTTCTCATTGCCTTTCTTCTTGTCCTTGATGGAGAGTCCCTCTACCGGTAACTTATCTGCTTCgCTGCTGAAGACTGCCCTTTCATTTTTTGCGTCCACTGTGAGCCGAATTGTCTCCTTGCCAGCCCCCGTGGTGATGGTCTCTTTGGTGACCGTCTCGCctgttgcagactttttctttccttcttcctcATCGCTCTCTGAGCTGCTGGAGGAAGAGCTGTCTGATGCCACCAGTGGAGCTTTtctcgccacacacacactccacacacatgGGTTCTGGTTTGATTTGGTATTGCCAGATCCGCTGAGCTCCGAGTCCACAGGAGAGCTGcatctggggcctgtttcagAGCAACAGAAAGGCTGGAAGTCAGTGAACTTGGCCCATCCTTTCTCCTCTGCCTCTGTGGCAGCTGGTTGGGAGGCTGGAGTGTCCCAGGCAGAAAAGCCCACTCCTGGTGCAGGAGCCTTTGAGTTCACCTCCCCGAAGTCTGCTATCCAGCCAGTGCTCTTTGTTGCCTCAGTCTGGCCCTGGTTTGAGAAAGGATCCAGGTCATCTTTAGGATCCTCTCCTTCCTCAGAGTCTGAGTCTGCTGCTCTGTCAGACGCCTCAGTGCCAGAAGCTGCTGTCATATCACAATCTTTACTGGCTGCTGGGCTCTGGGATGATCGTGACCCACCAAACCTGTTACGGGACTTGGTTTGTGTTGCAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114476 lncRNA downstream 2902 15062611 ~ 15063137 (-) True G85011
TU114472 lncRNA downstream 8110 15057725 ~ 15057929 (-) True G85007
TU114375 lncRNA downstream 110632 14954128 ~ 14955407 (-) True G84948
TU114376 lncRNA downstream 110632 14954128 ~ 14955407 (-) False G84948
TU114433 lncRNA downstream 214016 14851720 ~ 14852023 (-) True G84971
TU114507 lncRNA upstream 104990 15178340 ~ 15179173 (-) True G85027
TU114585 lncRNA upstream 288487 15361837 ~ 15363425 (-) True G85084
XR_005639985.1 lncRNA upstream 379859 15453209 ~ 15455514 (-) True LOC120563611
TU114626 lncRNA upstream 382305 15455655 ~ 15458913 (-) False G85121
TU114627 lncRNA upstream 382305 15455655 ~ 15458913 (-) True G85121
XM_039808233.1 mRNA downstream 8909 15051850 ~ 15057130 (-) True dnaja2b
XM_039808420.1 mRNA downstream 53223 15004301 ~ 15012816 (-) True LOC120563916
XM_039808419.1 mRNA downstream 75525 14973281 ~ 14990514 (-) True LOC120563915
XM_039808185.1 mRNA downstream 98256 14961860 ~ 14967783 (-) True si:ch1073-390k14.1
XM_039808414.1 mRNA downstream 146763 14903173 ~ 14919276 (-) True elapor2a
XM_039809927.1 mRNA upstream 25276 15098626 ~ 15105742 (-) True lmf2a
XM_039809926.1 mRNA upstream 32721 15106071 ~ 15131264 (-) True c2cd5
XM_039809932.1 mRNA upstream 66091 15139441 ~ 15158824 (-) False b4galnt3b
XM_039809931.1 mRNA upstream 66091 15139441 ~ 15158824 (-) True b4galnt3b
XM_039808567.1 mRNA upstream 90203 15163553 ~ 15172203 (-) True fkbp4
TU114449 other downstream 98592 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 558838 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 829087 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 1032824 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 1448143 13573831 ~ 13617896 (-) True mafb
TU114636 other upstream 405632 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 441428 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1366024 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 1691365 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 1734706 16808056 ~ 16808416 (-) True G85435

Expression Profile