RNA id: TU114507


Basic Information

Item Value
RNA id TU114507
length 296
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G85027
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15178340 ~ 15179173 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttttatttatttttttaaacggtaCCTTGTCTGTGCACCACCACTCTGCCGTCAGTGTTGCTGTTGGTGAGAGCCATGAAGAAACCTTCCACCTGCATCATGGGAGATGCAGACAGCACTTTCTCTGCCTCTGACCCCTGCTGGTCTGCTGAAGAACTGGCAAAGGGCTCTGGTTGCTCTGCAGCGTTTGAAGGTAGCGGTTTAAGCCCTCAGTGCGTCGGTTCTCCTTGTTGGAACTGCTCGGAGTGTGCAAACTCACACCTGATCCTGCGTACTTCTCCACGAAGCCACCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114476 lncRNA downstream 115203 15062611 ~ 15063137 (-) True G85011
TU114472 lncRNA downstream 120411 15057725 ~ 15057929 (-) True G85007
TU114375 lncRNA downstream 222933 14954128 ~ 14955407 (-) True G84948
TU114376 lncRNA downstream 222933 14954128 ~ 14955407 (-) False G84948
TU114433 lncRNA downstream 326317 14851720 ~ 14852023 (-) True G84971
TU114585 lncRNA upstream 182664 15361837 ~ 15363425 (-) True G85084
XR_005639985.1 lncRNA upstream 274036 15453209 ~ 15455514 (-) True LOC120563611
TU114626 lncRNA upstream 276482 15455655 ~ 15458913 (-) False G85121
TU114627 lncRNA upstream 276482 15455655 ~ 15458913 (-) True G85121
XR_005639984.1 lncRNA upstream 276667 15455840 ~ 15456554 (-) True LOC120563610
XM_039808567.1 mRNA downstream 6137 15163553 ~ 15172203 (-) True fkbp4
XM_039809932.1 mRNA downstream 19516 15139441 ~ 15158824 (-) False b4galnt3b
XM_039809931.1 mRNA downstream 19516 15139441 ~ 15158824 (-) True b4galnt3b
XM_039809926.1 mRNA downstream 47076 15106071 ~ 15131264 (-) True c2cd5
XM_039809927.1 mRNA downstream 72598 15098626 ~ 15105742 (-) True lmf2a
XM_039808566.1 mRNA upstream 3436 15182609 ~ 15189986 (-) False wash1
XM_039808565.1 mRNA upstream 3436 15182609 ~ 15189986 (-) True wash1
XM_039808523.1 mRNA upstream 40577 15219750 ~ 15261813 (-) False ptprq
XM_039808522.1 mRNA upstream 40577 15219750 ~ 15261813 (-) True ptprq
XM_039808524.1 mRNA upstream 40577 15219750 ~ 15261812 (-) False ptprq
TU114482 other downstream 104990 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 210893 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 671139 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 941388 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 1145125 14031104 ~ 14033215 (-) False zgc:77752
TU114636 other upstream 299809 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 335605 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1260201 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 1585542 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 1628883 16808056 ~ 16808416 (-) True G85435

Expression Profile