RNA id: XM_039808672.1


Basic Information

Item Value
RNA id XM_039808672.1
length 9199
RNA type mRNA
GC content 0.45
exon number 43
gene id chd2
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16155984 ~ 16187336 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACCGCCACGCtgactttgactttttgttGTCTAGTGAATTAAGTTTTGGAAACTACGTGCGCCAGAAAGATGGGCAACCAGAGAAGCACGATTACTCAACGCAGTATGTGTTAAAAtgAGCCTTGGAAAAGTCGCAGGTCCGTCATCTCTTACCACATCGCTTCACATTTGTGGTTGACTGgAATTCCCTTGATGTTTTACGAATTGCGTCAAGAAGAAACAAGTTCATCTGACCCAAGCTAAATGgGTTGACATTTAGCCACCATGGAGTCGCAAATTGAAGGTTTCGGAGATTGCGCTGCAACAGAGATTTCGGAGGAATGAGACCGGTGTGAAGATTTTCGAattttgaagaaaaagaagacagcTCTACGCCATTCAACTGGATATTGCTGAGGTGGAGACAGCGTTGTTTAACGTGAAGATGGCAAAGTGGTTTGGCAGTTAGCCACATTTTGACAAGATgaaactttttttctgactgTACTTTCacgatggatttttttttttttacgactgTGGACGCTGGAACACCGTTGCTGGCTGTACAGCGGACTTGAAAAAGTACACTGTTTTTGGAAACAAAAACCAGCCTTTGTACATTTGATattcaaatgttgttttttaaataaagtgtatctcgtattttttttttcctggcatTGTTTCTTTAGCTAATTTCCAGAAAATTACAAGAGGATATTTGGCGTATTATTTTGATAATGTTGAAGTCCATTAGCTCGGCTGTTGGTTTTAAATATTTCAGCTAATCCGTACAACAAATTCATTTGGTTAGCACTGACTTTGTGTCACTATACGTCAAGGTTTGACCACATCATTTATAAGCTAGCATAGTTTACGGTAAACTTCGTACTGGGTTGATGAATCTCCTGATGTAATGCTCTCTTTTTCGGGTGTTCTACAAAGAATATTATCGCTGGATTGGTGAGATAAAGGAAAAGGGGTAATACATTAATGAATTAAAACAGTTGAATACACAAATTTTTGTAAGGTACGTTGCAAGTAGTTAAGATTTTGGTCTTAACAAAAATGGTTTCCAAAGACTTTCTAAAATGGCTCCTGGCTGTCCTCCTTCCTGTCTGAGCAGGAAGTGATGCAATTGGTGCAACAGAACAAATATACTTTTATAAAGCCTCTTGGTATTCTTACCTTTTTTGAAGTGGGGAGTAAAGGTCTCAACTTCAAGTCTGGGGCTGAAAATAAATGTAAGTTTATATAAAAGCAAATTTTAAACCTAATAAAAGGGGTGGGACTTAAACATCACCTGAGTGTGGGGTAAATGGAAATAACGTCAATCAAAGGCAAAGCTTTCAGAGCTAGGAAGGAGCTCTAGATGGCGGCTGAGCCTTGGGAAGGGTGCCATGGGCTTTCGTCAGACCGTTTCTCCTGCCCGTTTTTCGACCGCGACCGCTTGCTTTTGACTAAAATTTAAGTTCTGTGATCGTACGATAGGTGTTTTATTAAGAAAATAGGCGTTTTGCGAGGTTTTTGGGCTGATTTTTCGAGTTGTACGAGCCGTCTGTGCTGAGGGAGTGCTTGTCGTTGTTTTCCATACTGGTCTCTGGCAGCCATGGCGCGCCTCCATTTTTAGTGTGCTGCTCTCCTCTGTCGCTCAGAGTCTGACAGCAGATGAAGACTTTTAAAGGCCTATAATGTTTTCGAAACAAGGCTCTTTTTTGTAATTTAGCGTCAcgttattatttttacagtttatttttattcGACTCGGATAGAAGGCTGTGATAGATCGAACGTGAATCTAATAGTTCTTTTGTAGGTTACCACATTTCTTCACATTGAATTGGTCTGTTTACATTGTGTAGTGCATCATTTACTAATTTTCTCATCCTTAAATCTTATTTTTCTAACCCTTCATGCGATGACGCAGTTGGAATTAATTGCATGCGGCTTGATCCGTGGACTATAACGACATACGTTGGATATTTAACGTATTGTAGCAGCACCTGTCATTTTCCTTAGATATATTTTAAATCAGCGATGTAAATAATGATACTCAAATCCTTCGATTTAATGCCTTTTTTCATAACTCGTGTCGCACCTCCTGGATTTTAACTGCCACCTGAGCAAAGGCAATCTTGTGGGACTTGTATGATAGTTCACGCTTCCTCTAACTTTTTGACAGTAAATTCCAGGACAAAAGACCATCCTATTACAGATTTTCAGGATACTATCATGATGAagaataaaactaaaaaacaagAGGATGAAGGATCGACTCAAAGCAACGCATCAAGCAATTCAGCCTCAGAGGAATCCAACAGATCTGCGTCAGAGTCTGGGAGTCAGTCAGAGAGCGAGCATGGCAGCGAGCAGAGGAGATCCCACAATTCTGAGTCAAACAGCTCCTCAGAGTCAGAGAGTCACTCAGAGTCGGAGAGCGGCTCTGCAGGGTCCAAATCACAGCAAACCACAGCCGAAGTGAAAGACAAACCAGTTAAAAAGAAGGAGCGTCTGGCTGATGTGAAGAAGATGTGGGACGAACATCCAGATGTGTATGGGGTCAGGAGGTCAAATCGCAGTAGACAGGAGCCGGCTCGTTTAAACATTGGAGCTGGGGGTAGCAGTGACTCTGAGAGTGAAAGTCCCAAAAGAAAAACATCCCGAGCTAAGAAGAAAGAAAATATCTGGAAAGATGATGACTcaaatgatgaagaggaggaggaggaggaggaggcttcCAACAGTACAGACAGTGAGCAGGAAGAGAAAAAAGTTAGATCCAGACGACTTCCTGCTAGAAGACCTCAGACCAAATCATCAACAGCCAAAAAACAGCTGTCTCAAAAAGGCAGGAAGTCTAGGAATCAGGACTCATCTGCTGAAGAAGATGACGACGATGACGACGACGATGATGACGAGGACGACGACGAAGACACTCCAAAGAGACAGACTCGGAAAAGGGGTGCAACAAAAGTCAAAAGTTATAAAGAGGACCAACATGACTTTGAAACGGACTCTGATGACCTGATTGAAATGACGGGGGACGCAGGCGAGGAACAGCAGGATGATGACAGTGAGACCATTGAGAAGGTTATGGACACCAGGACAGGCAAAAAAGGAGCCACTGGGGCTTCCACCACTGGGTATGCTGTGCAGGAAAATGGGGACCCGAATGAAGGCTTTGACCCCGAGAATGATGAAGGGGAGACTCACTATCTGATCAAGTGGAAGGGCTGGTCCTACATCCACAACACATGGGAGAGCATGGACTCTCTGATTCAGCAAAAGGTCAAGGGACTAAAGAAACTGGACAACTACAAAAAGAAGCACGATGAGCTCAGTTCATGGTTGAAGAGAGCGTCCCCTGAGGATGTAGAATTTCATAACTGCCAACAGGAGCTCATATCTGATCTAAACAAGCAGTTTCAGATTATTGAGCGGATTATCGcaacaaaaacaggaaagacACCAGGCACTGCTGAATTCCCCTCTCATAGTCACAAGATGCCCTCCTCCAATGAGCCGGAGTATCTATGCAAGTGGATGGGATTGCCCTACTCAGAGTGCAGCTGGGAAGATGGAGCTTTGATTGGAAAGAAGTTTCAGCACTGCATCGACAGCTTCATAAACCGAAACTCCAGTAAAACCGTCCCCTCTAAAGACTGCAAgGTGTTAAAGCAAAGACCCAGGTTTGTTCCTCTGAAGAAACAGCCATCATATATTGGAGATGACATCCTTCAGCTGAGAGATTATCAGCTGGATGGGTTGAACTGGTTGGCTCACTCCTGGTGCAGGTGTAACAGCGTTATCCTCGCTGATGAGATGGGGCTCGGAAAGACCATCCAGACCATCTCCTTCCTGTCGTACATGTTTCACCAACATCAGCTGTATGGACCCTTTATAGTGGTGGTGCCTCTGTCCACTCTCACCTCCTGGCAGAGGGAGTTTGAAACCTGGGCCCCGGACATGAACGTGGTGGTCTACCTCGGGGATGTCATGAGCAGGAAATCGATCCGTGACTACGAGTGGGTGAACCATCAAACGAAAAGAATACGTTTCAATGCACTATTAACCACTTATGAAATTCTACTTAAAGACAAGGGGGTGCTTGGGAACATCAACTGGGCGTTTCTGGGTGTGGATGAAGCTCATAGGCTGAAGAATGACGACTCCCTGCTGTACAAAACATTAATGGAGTTCAGGTCCAACCACAGGCTCCTCATTACTGGCACTCCGCTGCAGAACTCCCTCAAAGAGCTCTGGTCACTGTTGCACTTCCTCATGCCTGACAAGTTTGCTTCCTGGGAGGATTTTGAGGAAGAACACGGGAAAGGAACGGATAACGGTTATCATAGTCTTCACAAAGTCCTCGAGCCCTTCCTTCTGCGACGTGTCAAGAAAGATGTGGAAAAATCTCTCCCTGCTAAGGTGGAACAGATCCTCCGTGTAGACATGACGGCACAGCAGAAACAATTCTACAAGTGGATTTTAACGAGGAATTACAGAGCTCTTTTCAAAGGCACCCGAGGCAGCTCCTCTGGCTTCCTGAACATAGTTATGGAGCTTAAGAAGTGCTGCAACCACGGTTTCCTCATTAAACAGCCTGAGGATCCAGAAACTGAAACCCAACAGGAACACCTGCAGAGTCTAGTGAGGGGCAGCGGGAAGCTGGTGCTGCTGGACAAGCTGCTGACCAGACTCAGAGAAAGAGGCAACCGAGTCCTGATCTTCTCCCAGATGGTCAGGATGTTGGACATTCTGGCTGAATACCTCGCCAAGAAGCGCTACACATTCCAGcgGCTGGACGGTTCCATAAAGGGAGAAATCCGAAAGCAAGCACTTGACCACTTTAATGCAGAAGGCTCAgagGACTTCTGCTTCCTGTTGTCCACCAGAGCTGGAGGTTTAGGAATAAACTTGGCCTCAGCAGACACCGTAGTCATCTTTGACTCTGACTGGAACCCTCAAAACGACCTGCAAGCACAAGCCAGGGCTCACAGGATCGGCCAGAAGAAGCagGTAAATATTTATCGACTGGTCACCAAAGGGACAGTGGAGGAGGACATTATTGAGAGGGCAAAGAAGAAGATGGTTTTGGACCATCTTGTCATTCAGAGAATGGACACCACTGGTCGAACTGTACTGGACAGCAACTCGGGAAACACAAATTCAAACCCGTTCAATAAAGAAGAACTGACTGCTATCCTCAAGTTTGGTGCAGAGGAGCTTTTCAAAGAGGCAGAAGGAGAGGAGTCTGAACCACAGGAGATGGATATTGATGAGATCTTGAGGCTGGCTGAAACAAGAGAAAGTGACCAGGGCTCAAGTGCTACGGATGAACTTCTATCTCAGTTTAAGGTGGCCAATTTCTCCAGCATGGAGGAGAGCACGCCAGAGTTTGCGGATAAGTCCATACGGGAATGGGATGATATCATCCCTGAAGAGCAGCGACGCAaaatagaggaggaggagaagcagcGGGAGATGGAAGACATCTTCATGCTGCCTAGAAGCAGGAGCTCTAACAAGAGGGCTCAGGCCAACGATAGTGACAGCGACGTGGGCTCCAAGCTGAAGCACCGCTCCTCAGGCTCTGAAAGTGAGACTGATGATAGCGATGACGACAAGAGGCCGAAGAAGAGAGGCAGACCCAGAGCTCGCAAAAACAATGTGGAGGGCTTCACTGATGCGGAGATCCGCAGGTTCATTAAGGCATACAAGAAATTTGGATCTCCACTCGAAAGGTTGGAGGCCATCGCCCGAGATTCTGAGCTGGTTGACAAATCCATAGCAGACCTGAAGAGACTTGGTGAACTGATCCATACTAGTTGTGTGACTGCAGTGCAGGAGCACGAGGAACACCTTAAGGAGAACCCAGTTGAGGCCAAAGGTCCTGGGAAACGCCGAGGAATTAACATCAAGATCTCAGGAGTGCAGGTCAACGCCAAGTCCATCATCCAGCACGAGGAAGAGTTTGAGCCCCTGCACAAAGTTGTGCCCTCCAATCCTGCTGAGAGAAATAAGTTCAATCTGACATGCAGGGTCAAGGTAGCCCACTTTGATGTAGACTGGGATCTGCAGGATGACATTCAGCTCTTGCTTGGTACTTATGAGCACGGCTTTGGGAACTGGGATCTGATCAAGACGGACCCTGACCTTAAACTCGCTGATAAGATTCTCCCAGACGATCCAAGCAAAAAGCCCCAGGCCAAGCAGTTGCAGGCGAGAGCTGAGTATCTTCTGAAGCTGCTGAAGAAAGAACAGGACAGTACAGACGGGTCTAAAACAGGGGAGGAGGTCAaagtgaggaagaggaagccTCGGGTGAAAAAGGAGAAGATTCTCAAGGATGAGCAGGGCAACGACATCTCCTCCCCCCGCCTGTCCGACAACCCGTCAGAGGAGGGCGAGGTCAAGGATGATGGAACAGAGAAGTCTCCCGccaagaaaagacaaaagaaaaaggataacaaggagaacaaagaaaaacagggAACTCCTAAAAAGGAGAAGGAcggagacaaagaaaaaaagggtcccAAGCCCAGAAAAGAGAAGGCTAAAGGAGCCAAAGGGAAGAAGACTCAAGGTCCAGTTCACATTACGGCTGGGTCTGACCCCATTCCCATTGAAGGAAAGGAGGATGATGAACTCGACCAGGAGACTTTTAGTATTTGTAAGGAGCGCATGAGGCCGGTGAAAAAGGCCCTGAAGCAGCTGGATAAACCAGATGAGGGTCTGTCGGACcaggagcagctccagcacACTCGCACATGCCTACTAAAGATTGGAGACCGAATCTCAGAGTGCCTTAAAGCCTACAGTGACCCTGAACATGTCAAAATATGGCGGAGAAACCTCTGGATTTTTGTGTccaagtttacagagtttggtGCAAGGAAGCTTCACAAGCTTTACAAGATGGCACAGAAGAAGCGATCACACGAGGAAGAGAAGGAGCAAAAGAAGAAGGATGATTCTGGAGGGAGGGTGAAAAACTTCAGACCAGAGTCCTGTGGTTCCAGTCGAGACTCCACGGGTACGTCGTCCTCCAAACCTGGCTCTCACTCGACTCAGCCAGGCCCTCACGGACACCACAGAGAGTCGTACAACTCGGCTAATAAGCGGCACTTTAGCAATGATGATAGAGGAGACTGGCAGAGGGACCGTAAATACAATTACCCAAGTAACAGCAACCAGTCATGGCAGGGAGACCGACATCATCAGTATGACCGCTATAAGGATCACTATGGGGATCGACGTCCACATGGAGACTCGTACCGCAGCTCAGGCAGTTACCGCAACAACAGCTCCCCTCGAAAAAGGCCATATGAGCAGTACAGCAACGACCGGGACCACAGGGGTCATAGACCATATTATGACAGGCATTCGGACCCCAAGAGAAGACGTCCGGATGAATTCCGTCCCAACTACCACCAGGGAAGAGAAGGCCCTCTTCAGGACTTCAGGAGGATGCCAGAGCACAGGCCGGCCGGTCCAGCCGGGCCAGAGCACTACAGCAGGCCCTTCCACCCTGACAAACCTCCTCCGCCGCAGGACCCTCGCTCCCCACAGGCTCAGAAGTCTCCCCAGGACTCCCGCTCTCCGCCAGAGCGGCCTGCAGAGCCAAACGCAGTGGCAGATCCTAACTGGAACAACAGGAAAACATAAAAGTATGACAGTGCTGGCTAAGAAACTGATCTGGGCGTCCACGGTCAAAGCCACATACATGCTGCTGATGGACAAGTCTGGACTCGCCAATCATAAGCTCACAGTTGGAAAGGGAATCAACATGAACCCTCTTTACCAGCAAAACTATTTAGCTCTTTTCTCCCAGTGGCTGTGAATGATTTGTGACCTGAAGGAAGAGGTTTGTTTTCCTCTTGTCATCTTcaagatggaaaaaaaacccAACTAAAACAAGcatctttatttaaatgaatggaCTCAAATCAGTTAACCACGGTAAGACTGAATGGAGTGCTAATGGATGCTTAGTCCCATGGACTATTTTCTAAGGAGAATTTAGGATACATGAACTGATGACTGATCTTAATCCTAAAAGTGCCTGAAGGCTTTGGCCTTTCTGAATGGTAAATGTATGGGATTATTCCCAAAGGAAGCATGACAtgggaattattttttatttttttttgtgtttagctTTAAGTCTTGCAAATGATGTCATTAGACGATTTCGATACAAAAGAATGTGTTCATCATCATCTGCACCTTCAAAATGTAGCTGAACTGAATCACCGTGTGGTTTAAAATGGCGGTGTATGTTTCCTCTAAACACTCTACAAAAAGGTTTTTAGCAAATTCAAATTGCTCATGTGTACAAATCATTATTTCTGTAATTGTGTAGCTACATAAATCATTGCAATCGTCTTGCTTTGTTCACTTTAACCACTTTCCCTCTTAGTAGGCCCAATGAAGCTTTGTAAGCAGTATTTATTGCAAAAACTTTTGCAAAGGCTGTTAACACTATGACTTAGAACAATCCTTTATTTTTGCCTTTCAGTATTCTGATGGTTAAGAACGGTACTTCAGTGTAATTTCATTAATGCATCTAGCCACCTACAGTATGTAGTACTCAATTATGTCTGAAAATACTATgtgataaaacattttctttccttATCTATGGTTGGGCAATGCTGTTGCTGGTAGGTTGTTAAAGGGTTATCAGGAAGTTGCTGATTACATTTGGTTATGTTTATTACCTTTGGTCACTCTTTTCCTGTGCCAAACCTGCTCTGGCtctcagatttctttttttacgcTTCTCCATTTGTGCCTTATTTATGTGAATATtatcatactgtatattgttcgTGGACAGTACTGGGGCCTAAAACAGGCAGGATGTAGTATTACTCATTTTTAGGAAATTGCTCTAAATGAACTTGTTAAGGGACTACGTATTCTGGTAATCATCATGTGGTTCTGTGATTTTTCAAAAGAGTTGATGATTTGAGGGGAAAACATAAATCTAAAGAAATCATGTGTGTTCGGGCCAGGGCACTTAGCCGACCTGTTACAGTGAACAGCCAGCACATCTTTTCTTCCATGTTAAGCAAGCTACAGTTCCTGTATCATATGTTCTTCAAGAAAGTctaaataatttatatttgtgACAAAACCACTCTTCATGAGAAATGTGCTGTACATATGTTTGGACATATGTAATAAACTTTGttacacaatgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639953.1 lncRNA downstream 107743 15858841 ~ 16048241 (-) True LOC120563424
XR_005639952.1 lncRNA downstream 107743 15969073 ~ 16048241 (-) False LOC120563424
TU114653 lncRNA downstream 611902 15536171 ~ 15544082 (-) False G85133
TU114634 lncRNA downstream 683127 15466582 ~ 15472857 (-) True G85125
XR_005639984.1 lncRNA downstream 699430 15455840 ~ 15456554 (-) True LOC120563610
TU114811 lncRNA upstream 1739 16188853 ~ 16194602 (-) False st8sia2
TU114816 lncRNA upstream 70861 16257975 ~ 16258235 (-) True G85250
TU114820 lncRNA upstream 88537 16275651 ~ 16277412 (-) True G85253
TU114898 lncRNA upstream 183887 16371001 ~ 16372919 (-) True G85312
TU114905 lncRNA upstream 274448 16461562 ~ 16462518 (-) True G85319
XM_039808198.1 mRNA downstream 343985 15802424 ~ 15811999 (-) False nr2f2
XM_039808196.1 mRNA downstream 346328 15802424 ~ 15809656 (-) True nr2f2
XM_039808197.1 mRNA downstream 346329 15802424 ~ 15809655 (-) False nr2f2
XM_039808556.1 mRNA downstream 671839 15472934 ~ 15484145 (-) False ttc23
XM_039807895.1 mRNA downstream 692270 15456807 ~ 15463714 (-) False pgpep1l
XM_039808675.1 mRNA upstream 6469 16193583 ~ 16209186 (-) True st8sia2
XM_039808991.1 mRNA upstream 26661 16213775 ~ 16254088 (-) True slco3a1
XM_039807711.1 mRNA upstream 193829 16380943 ~ 16409443 (-) True LOC120563512
XM_039807471.1 mRNA upstream 264919 16452033 ~ 16461232 (-) True zgc:162879
XM_039807741.1 mRNA upstream 275441 16462555 ~ 16549024 (-) False sema4ba
TU114652 other downstream 611902 15514778 ~ 15544082 (-) True G85133
TU114636 other downstream 672058 15478982 ~ 15483926 (-) True ttc23
TU114482 other downstream 1082634 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 1188537 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 1648783 14501960 ~ 14507201 (-) False LOC120563775
TU114908 other upstream 252260 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 577601 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 620942 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_375 other upstream 1739933 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115583 other upstream 1843894 18031008 ~ 18036276 (-) True G85813

Expression Profile