RNA id: TU114811


Basic Information

Item Value
RNA id TU114811
length 3961
lncRNA type sense_over
GC content 0.36
exon number 3
gene id st8sia2
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16188853 ~ 16209186 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACACTTTATGCAGATAtgaataaacattaaaataacttcacataaaaaaatatactttactGGAGACTTAAGTAATTGTGGTCAGGAATTAATtcaattatgtttatttttaggccaATAGCAGCCTGGTTGGTCAAACCAATACATCAGTTTAATGCTAGTTTGGATTATATTGTTGAACTTTCAAGCTTCACCTCAGTAAAACTCTTAATGTTTAGTTGAGTTTTTTAGGAGTTGTCTTGATACAGGACGCTTTGGGgtatttttctgcaacaaaatGCTTTCCAAGAGCTCTGCAGCTAAACAAGTTGCCTCTCATGTGCTTCCAGCCATGTGATACATAATAGTGTTGTTTTGCCAGGATGCGCCTGTTGACTCGCATTTTGGCCCACACCCTTACTTAAATTAAGAATGGATACGAAAGTTGTACTAGAGAGTGAGCGGTCTGAAGCAATGAATGGTTTATTTGTCTGAGCTcggcaaaaatagaaacatTCTGCATCCAACACAATTAAGTTAATTAACCCAGAATTTGCCACTGTTGAAAAAACTTTATACTGAcctgtactgtacagtagttTCTGCTGATAACCTGAGGGGGTTGTGCTGTATAGTTTCATCTTACCTCTTTTCATGTATACCGTATGTAAACATCTGTTTAATGTCCAAATTTCAGCAAACATGTTAGCTTTTGCATGTTTTGTCTTGACTTGATACATACAACTTtggtatttatatttttgttgttgttgaaaataTTCAATATGACTCAAGGATACTTAAATTGTGCAGTTATGACAAAGTGAATGTACTTTTCTGTGGCAGAAAACAAAAGATCAGAATGGGGACAATAACACTTCAAGACTCCCTTAAAACGATTTAACACTTCAAAGGAAGTACTTTTATTTCAGTAGTATTTCAAAGAAATGGAAACTATGGAAACAACTGTGGTTACACAAAACATATCTGTGTCAAAAACCAAACAGGGTcttgttttttaataaacttccaaaacaaacttttacaaacttttttttttttttttttttttaaatgtgggaTTGGGGAAATTAGCTACAGTCTTCAAATAGCTACCACAATGACTTTGATTCATTTTACAACAGGAACTGTCTGCAGCAGATGATTGCGTTCTAGTAAAAGTCCAGAATTAGCATCTTTAAATGAGCAGGTTTTTTCCACTATTTCACGCACAactaaagataaaataaaagatgTTGCCAAGATGTTAGAGGATAACTGTACAAGGGTGACATACTTGCCTGAGACAAACTTTAGCAAAGGCCAAACATGGATCTGCAGTTTTCTGCACATACAGTGAAAGACTAAATGAAACATGACTCGATACTGAAATGAACAGTGGCCATACAGTCTGATGGAAAACAGAGGAAATAGCCAGCAGTCTGCTAAAGCACATGCCACAAATATGGTTAAAAGTTTGATTCACATATGATTGAAAAACATTCACATACACTCCATATGGCTTGTGTATctaacagtaaatatattagtcTTCTATGAATGGCCATAACTTTGTTTGGAACAAAGGAAACTACACAATGTTCTTTCTCCTGGAAAGAAAAAGTTCAGCATTGCCATTGTCATTCAGaaacagctgcagctgtagGCCATGGTGCACAAATCCAATAACAGTTTAGATTAAAACAGAAGATCACCTCAGCCACTCACATTTGCTGCAGAAACCTAATAGGTGTACTCTGTAACGTTGTTAGTTTACTGTAATTACATTCAGAGCGCAGACACACATGGGTAAGGTTTGTGAACGCCTCTGCAATTTCTTTTGTGTACTTTATGTCAAACTTTCGGTTGATCATTTGTGTATTTAGTATTTGATTTAAAGATATAACAAATTTGACAAACCAGTTATGATTTTCATTGTCTTTATTAGTAATTCAATACTTATCTAACGGGCCAAATCGTTTCAGGTAAAATCTCCATTTTAAACCCACATGTCAAAACATTTCCACCAAGATAGggacacttttctttttttgtttttaccagAATCTGTACGGCACAGAGAAGCAACTCTTCAGGGGGAAAACATCAGTCCTTTTCAAGTCAGACATCACAAGAGTCAGTGAGCCATTAATGGAAATTGATGTGGGAGACTTTCCATAATACTTTACTAGCTGCTCACCTCTCAAACCTATCTCAAACAAGAGATACCCGATTTTGGGGATTATTTTTAATAGAGTAACTAGACATTATATGGCAACATAATATTGTTTTGATTTAGAAAATAAGACACTGGGAGCATGTCCAACATGTTAAATACTGAAACTACATCACTTCCAACCTGTTGTTGATATTGTTCAGTGGTTACTTGATACAGTGACATTGTGAATTAATTAACACACCCGATCACAACAGATTACAGCATTCACATTCATAGCAAATAGATGTATTCCATAAACACCGTACAAATATAACCTGACTATATTATTTGAGATTTTAACCAAATTTGAACCTCGAAAATGTAGAACTTCAGCTGAGATAGCAGCAAAACAGGAATGTCTACATCAACACACGGTAAAAAAATATACACTTACTCCATAGATAAGGACAGACTGCCTTCGACAGTATATATGCACAATAAAGTGGTTAGTAGATAGAAATATATTTGGTATGAAAGTTtagttaaaaatatcaatagaTTCTTCAGTgtgcaattttttttacatttcaataaAGTAATTCTGCACAATATTTCTTGCATGTTAACATGTTATGCATTAACGGACTGTCTTTAGTTTTAATATGGGAAGATCATAGCTTTAAAGCCGGCATTGGTTCCTCCTATAAACtcagaaaatgtaataaaaaaaaagaaaagaaaagaaaaagaagtaaTTTCCATGTAATTAGATGTTTTGAAGACAATTGAATGCAAAGTCTTTAACAGCCTGATTACTGAATGACTTTTGAGAAGAAGTCACAATATAAAGCATCCTGATCTTCAACATCAGAAACAATTGTGCAAGTTATTTGTGCCACATGATAGAAGCGTAAGCTAAGCAGCAAACAATGATATCCATACGGCTCCAGTCCTTTAAACACAGGTAAAAGCCATGCACAAGCAGCATTAGAAGTTGACGATCTGATAAGACTTGAACAGCATAAAGATATAAGAAATCACTTCAGATGTCCCGGGCAGAATAGGAGATATCAAATATTGATGTCCATGCTGGGATTCacctGTATTTGACATCAAAGAGGGTTGAGTCATCCTCATCATCGTTCTCCTCATTAAGAGGGGCCATCTCCACACGCTCTGCAGGTGTCGTTATAATGTCGTATTTTCGTGTTTTCCTGATCCGTCTCCCAGATCTGACCACTTTGATGACTAGGCATGTGATGAGAACAGCTGTTAACACGCAGATGAAAATAACAATGTTTTTCAGAGTTGGAAGATACGTTATTATTGATGAAATCCGGGATCCCACGGCGGCATCTGTGACATTATGTGTCAGTTCATCTTGGCTGATGATGGATGATGTAGAATTTAACTGCGTCGCGGGTGAAGAATGAGTTTGTAGTTCGCCACCGACAAGCCAAAGAGCCGCGATAATAAAAGTTAAAACCGGATTGTATGTCACCATGgtgctgaaataaaaaaaatcaaaatgcaAGCCAGGATGTTCTTTCAGTAGCTTCTCCAAACTAGATGAAATGCGACAGCAGCTGTCACATTATAGAGCATCGGCTTATCACTGTTAGTTTTGGCTATTTACACAATAATGCGAAACGCAAATATCCATCTTCCTCCTAGTGCAATCGTCTCCAAATGGTGGACTTCTAGGTGGTAACTGATTTGCCTACACAAACGTGTTTCCCTTGAGGTGAGTTACAGCAATTCCTTCCTTATTGCATTTGGACTGCATGGAGATGGGGATTATCCGCCTCCGGAAGAGCTCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114805 lncRNA downstream 1517 16176615 ~ 16187336 (-) False chd2
TU114804 lncRNA downstream 5250 16176615 ~ 16183603 (-) False chd2
TU114806 lncRNA downstream 5426 16173689 ~ 16183427 (-) False chd2
TU114802 lncRNA downstream 5426 16176615 ~ 16183427 (-) False chd2
XR_005639953.1 lncRNA downstream 140612 15858841 ~ 16048241 (-) True LOC120563424
TU114816 lncRNA upstream 63373 16257975 ~ 16258235 (-) True G85250
TU114820 lncRNA upstream 81049 16275651 ~ 16277412 (-) True G85253
TU114898 lncRNA upstream 176399 16371001 ~ 16372919 (-) True G85312
TU114905 lncRNA upstream 266960 16461562 ~ 16462518 (-) True G85319
TU114919 lncRNA upstream 334005 16528607 ~ 16528849 (-) True G85328
XM_039808671.1 mRNA downstream 1716 16155984 ~ 16187137 (-) True chd2
XM_039808672.1 mRNA downstream 1739 16155984 ~ 16187114 (-) False chd2
XM_039808673.1 mRNA downstream 5423 16155984 ~ 16183430 (-) False chd2
XM_039808670.1 mRNA downstream 5423 16155984 ~ 16183430 (-) False chd2
XM_039808674.1 mRNA downstream 13765 16155984 ~ 16175088 (-) False chd2
XM_039808991.1 mRNA upstream 19173 16213775 ~ 16254088 (-) True slco3a1
XM_039807711.1 mRNA upstream 186341 16380943 ~ 16409443 (-) True LOC120563512
XM_039807471.1 mRNA upstream 257431 16452033 ~ 16461232 (-) True zgc:162879
XM_039807741.1 mRNA upstream 267953 16462555 ~ 16549024 (-) False sema4ba
XM_039807740.1 mRNA upstream 267953 16462555 ~ 16509401 (-) True sema4ba
TU114652 other downstream 644771 15514778 ~ 15544082 (-) True G85133
TU114636 other downstream 704927 15478982 ~ 15483926 (-) True ttc23
TU114482 other downstream 1115503 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 1221406 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 1681652 14501960 ~ 14507201 (-) False LOC120563775
TU114908 other upstream 244772 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 570113 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 613454 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_375 other upstream 1732445 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115583 other upstream 1836406 18031008 ~ 18036276 (-) True G85813

Expression Profile