RNA id: XM_039808675.1


Basic Information

Item Value
RNA id XM_039808675.1
length 4003
RNA type mRNA
GC content 0.43
exon number 6
gene id st8sia2
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16188853 ~ 16209186 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTATTTTGAAATGTAGGCTATCAGAGCACACGTCCCACATTAGATAAGACTGCACTCTCTGTGTTTGGATACGACTCTATAGCCTACGCacctgtctgactgtctctaCTGCGGTCTTACGCCTCCTCTTATCGTGAGCCAACAACACCTGGAGGAGAGTGGACTCAACCCGGCTGAGCTAAAACATGGAGCTGTTGGCCGCTGCGCCTTTAAGACCGCATGTGGTCTACAGCTCGCTGCTCCCATGGCAGGCTCTGTAGGTGCACCACGCTCTCAAAGTTTGACTGGGGAATAGCTCCGGGTACAGGGGACACGGCAGCAGCATCCCCCCCGCcgggaaatacacacacacacaaggaaccATCATCTGAAGAGGGGGGAAGGACCGCAGCTCGCCTGGGAGTGTCCGACTCAGGCGATAAGAACAATGGAAGAGGTGGCTAAACGGATTTTCGATTTCTAAATGAGAAACACAAGAAGGTTATTGTAGCGGCGTTTGCTGAGAGGGACTCCCGGCTGCAGCCTCCCCCCCCTCAGCCATGCCGCTTGTATTCCGCACGCTGCTGTTCGGCTTTGTAACGCTACTCGTTGTGGTTTTCATAATTGATGATATTGCAGAAGTGGAGGAAGAAACTGCAAATACTGGACATTCACAGAAGATGAACTTGCACCAGCTCATCCCTCAACCACACAGAAAGGCTGCAGCACAAGTGGATCCGACTGCTTTGACGAGATTAAGCAAAGATGTAAATCATCTCGGTCCGAGCTACAATACCACTGTCAAGCTCTCGTCAAACAACTGGACCTTCAACAAGACGCTCTCCAACCTCATCAGGAAGAATATTCTAAGATTTCTTGATCCGGAGAGAGACATCTCTATCCTGAAGGGCACGCTGAAGCCAGGAGATATCATCCACTATGTGTTTGATCGCCACAGCACCATAAACATCTCAGAAAATCTCTACCGTCTTTTGCCAACTGTATCCCCCATGAAGAACCAACATCACAGGCGCTGCGCCATTGTGGGAAACTCCGGGATCCTGCTGAACAGCAGCTGTGGACCCGACATCGACTCTCATGACTTTGTTATCAGGTGTAACCTGGCACCAGTGGAGGAGTACTTTCAGGACGTGGGGTGGCGGACCAACTTGGTGACCATGAACCCTTCAGTGGTGCAGCGGGCCTTCCAGGACCTGGTCAGCGAAGAGTGGAGGGATCGCTTCTTGCAGCGGCTTCAAAGCCTCAGCGGCAGTGTGCTGTGGATCCCAGCCTTCATGGCCAAGGGGGGAGAGGAGCGCGTGGAGTGGGCCCTTCGTCTCATCCTGTTGCACACTGTGGACGTACGCACCGCCTTCCCCTCGCTGCGCCTGCTCCACGCTGTCAGAGGGTATTGGCTAACCAACAATGTCCACATCAAGCGTCCGACCACTGGGCTCCTCATGTACACGATGGCCACTCGCTTCTGTGAAGAGATCCATCTTTACGGCTTCTGGCCCTTCCCACTCGACCCGCAGGGCAGATCAGTCAAATACCACTACTACGATACTCTAAAGTACGAGTACACGTCCAGCTCCAGTCCTCACACCATGCCTTTGGAGTTCAGGACCCTGAGCGCATTGCACAGACAGGGGGCGCTCCGGCTCCACACTGGGACCTGTGATACAGAGAGGAGACCACAGAAGGAGCTCCAGAGAAAATAGCTTAAAAGGAGGATCTCGATGGAAACCACTTTCTTCACTGAGCAGACTCTGTACAGACTGTTTTCTTGTTTACACACTTTTATGAAACTTGAATTAACTTATTTTCAGTAATTGGaactttttgtatttcaagCTATTTAGTGACTTGTTTCACTGGTTAACGAGATTTCTATGGCAACCTTTTAAAATAATGAGACTCTTTTCTGCTGGTGTGACCAAACTGTTCATAGAGATCCTGTCATGTTCATCTGTTggccccttttttatttttcttaaaaagaCCATTTTTGAAAGTCTATCCAGGTTTCTAGTATGGTTATAAGTTTAACATTAAGGGTTCAGAACatattttgatgttttgtgtTCAAATTGGTCATGATACGCCATCAATTAATATCCCCAGTTTATGATATGATAGGGCTCCATTTAAGGCTTCAGTTGTGAATCACTTTTTGGGCCACAAGATGGAAGCACTTAAAAATCAGGGAGACTGATCGtaaaagaagaaatgtgtgtCAACTCTTCAAACAGTGTTTTTTAATTTGATGTTCAACTTGTGATAACAAATTTTCATCTGATAATGAACTTTTTATGCTTTTGTAGCTTCTTATAAAATTCGTTAATGGTGTTTACCAAAAGTCCAGTCAACCAGAGCTGCCATGTGATAAGGTTAGGTTAaccaaaaggaaaaatggaagCACGTAGAATTGTATTCAGCTTCTTTGAGGACAAAGAGGGAGTGTACCAGCTGTTCACATAGGAATGTTTACACAGACTTAGCCGGCAGTAAACTCTCTTTGTTAACTTTTCTCAAAGAACACCAGCCCTGTTTCTGCACTGGAAATGTTAGTAGTGAGGGCAGACTGTAGTTGTGTTGTGGTAGTAAGAAAAGCTTAAATTTCTTTACATGAATGTATTGGTGATATTCTTACAAGTGCTGTAAGAAAGGATGCCCATGTTGTGCTTTAAATAAATTACAGTTAGCAGCAGTTTCAGTGTAATAACACTGAGAGGACGATTAGCTCGTAACTTATTTGCCTTCATTAATTTTAAATGCTGTATGAAATATACTTGTATAGTGTGTTAGGGTTAGTATTTTAACCAATATAGGTTGATACAGATATGTGGGGAATCTTTATTGAATTTGAGAGTATTTTGTGCCTATAATCACTCAATTTGACAATTTGGACCATTCACATTCCCAGAAATAACTGTTCAGGGTTCATCTAAATCATTCTTAACAGAATGGGAAAGATGTATCAATAGTATCACCCACTTACGAAACACTTTATGCAGATAtgaataaacattaaaataacttcacataaaaaaatatactttactGGAGACTTAAGTAATTGTGGTCAGGAATTAATtcaattatgtttatttttaggccaATAGCAGCCTGGTTGGTCAAACCAATACATCAGTTTAATGCTAGTTTGGATTATATTGTTGAACTTTCAAGCTTCACCTCAGTAAAACTCTTAATGTTTAGTTGAGTTTTTTAGGAGTTGTCTTGATACAGGACGCTTTGGGgtatttttctgcaacaaaatGCTTTCCAAGAGCTCTGCAGCTAAACAAGTTGCCTCTCATGTGCTTCCAGCCATGTGATACATAATAGTGTTGTTTTGCCAGGATGCGCCTGTTGACTCGCATTTTGGCCCACACCCTTACTTAAATTAAGAATGGATACGAAAGTTGTACTAGAGAGTGAGCGGTCTGAAGCAATGAATGGTTTATTTGTCTGAGCTcggcaaaaatagaaacatTCTGCATCCAACACAATTAAGTTAATTAACCCAGAATTTGCCACTGTTGAAAAAACTTTATACTGAcctgtactgtacagtagttTCTGCTGATAACCTGAGGGGGTTGTGCTGTATAGTTTCATCTTACCTCTTTTCATGTATACCGTATGTAAACATCTGTTTAATGTCCAAATTTCAGCAAACATGTTAGCTTTTGCATGTTTTGTCTTGACTTGATACATACAACTTtggtatttatatttttgttgttgttgaaaataTTCAATATGACTCAAGGATACTTAAATTGTGCAGTTATGACAAAGTGAATGTACTTTTCTGTGGCAGAAAACAAAAGATCAGAATGGGGACAATAACACTTCAAGACTCCCTTAAAACGATTTAACACTTCAAAGGAAGTACTTTTATTTCAGTAGTATTTCAAAGAAATGGAAACTATGGAAACAACTGTGGTTACACAAAACATATCTGTGTCAAAAACCAAACAGGGTcttgttttttaataaacttccaaaacaaa

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K06612 SIAT8B; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114805 lncRNA downstream 6247 16176615 ~ 16187336 (-) False chd2
TU114804 lncRNA downstream 9980 16176615 ~ 16183603 (-) False chd2
TU114806 lncRNA downstream 10156 16173689 ~ 16183427 (-) False chd2
TU114802 lncRNA downstream 10156 16176615 ~ 16183427 (-) False chd2
XR_005639953.1 lncRNA downstream 145342 15858841 ~ 16048241 (-) True LOC120563424
TU114816 lncRNA upstream 48789 16257975 ~ 16258235 (-) True G85250
TU114820 lncRNA upstream 66465 16275651 ~ 16277412 (-) True G85253
TU114898 lncRNA upstream 161815 16371001 ~ 16372919 (-) True G85312
TU114905 lncRNA upstream 252376 16461562 ~ 16462518 (-) True G85319
TU114919 lncRNA upstream 319421 16528607 ~ 16528849 (-) True G85328
XM_039808671.1 mRNA downstream 6446 16155984 ~ 16187137 (-) True chd2
XM_039808672.1 mRNA downstream 6469 16155984 ~ 16187114 (-) False chd2
XM_039808673.1 mRNA downstream 10153 16155984 ~ 16183430 (-) False chd2
XM_039808670.1 mRNA downstream 10153 16155984 ~ 16183430 (-) False chd2
XM_039808674.1 mRNA downstream 18495 16155984 ~ 16175088 (-) False chd2
XM_039808991.1 mRNA upstream 4589 16213775 ~ 16254088 (-) True slco3a1
XM_039807711.1 mRNA upstream 171757 16380943 ~ 16409443 (-) True LOC120563512
XM_039807471.1 mRNA upstream 242847 16452033 ~ 16461232 (-) True zgc:162879
XM_039807741.1 mRNA upstream 253369 16462555 ~ 16549024 (-) False sema4ba
XM_039807740.1 mRNA upstream 253369 16462555 ~ 16509401 (-) True sema4ba
TU114652 other downstream 649501 15514778 ~ 15544082 (-) True G85133
TU114636 other downstream 709657 15478982 ~ 15483926 (-) True ttc23
TU114482 other downstream 1120233 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 1226136 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 1686382 14501960 ~ 14507201 (-) False LOC120563775
TU114908 other upstream 230188 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 555529 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 598870 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_375 other upstream 1717861 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115583 other upstream 1821822 18031008 ~ 18036276 (-) True G85813

Expression Profile