RNA id: TU114976


Basic Information

Item Value
RNA id TU114976
length 2560
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G85373
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16680151 ~ 16682888 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGTGTACACGCCCTGGGAGTAATGCATGAAGTCAGAGGTCACCTCAAAGGCCAAGCTGACAGGATTGCGTGTAGCGACAGCGTCCACCATCCCCATCTCGTCGTACTGAAACAGAAAAACGTTATCAACCACAGACTGTTCAATAAAGACATCTATCTGGAGGACAGACTCTGATGTTCACTCACCGCGGTTATGTTCATCACCTCCTTCACAAAAGCAACTGCTAGTTCGGGTTTATATGCACAAGTACCTTCCTGAAAAGCCATTAAAAGCCATAAAATATGTGACTTCAAAATCAGTTTACTTAttatttagttttgtttatGCTGTAGGATGGCAAATTATTTAGTTACAAAAGCTGTATATGGGTAGTCCTCCTCTGTCATCAGTCCCTTGTTGTACATAATGTATTCAAATGCTTGACTGGGAAGGCCGCTAGAAGACAAATTGAGATCTTGTTATAAAATTGTGTTCATGGTGATGCAGGGAAATTATCAAAAGATTAAGGAAACATATGTTTGACTCTCACCCGTTACATCCATGGTTGTTGAAGTCCTGAGCGCAGTCTACCAGCTGTTGTTCTGACTAAATAATTAGTAAATAGtgaaaatattacagtaaataaccTGCACTCACTATGACATTGgaactatattttttttacaagagcAACAGTTTTAAAAGTGAAGTGAAAGAAAGTCACCAGTGGTACAAGCTTCCCACTGCTGATGGCGGTAACAGACTCCAGACAGCCGGTTGTGGAAAAAGTCCAGCAGCTACCACAACCCCCCTTTGGTACAGAAAAAAGGTTAAACAATAAGCCATTTGATATATGGAATGAAACACATTCGGaggccattttttttctttacagaaaacatgttgacatgtcacagcaggaaaagcacaggtacaactaataacattaacgataGCACCGGTCCAGCAATTACTGCAATGCATGCAGTAATTAACGTTCTTAGTTACACCTGTGTTTGACACGTCATAAATTGTCCCAACTACATACAGCATACTAACTGTATACAGTACTAATCTTTATAGTATACTGCTTCTTAAATTAGTTGCAATAACAGGGAATGATATGCACTGGCAGATGTCAATCAACCTTCAACTTTAAACTGCCACTGTCAATTAAACTTAACAAAGAGACAGCAAAATATTCTTTTTTCACCACTATCCACAATAAGTTTAAGTATTTATTTCCAGCGATGAGCAGCTCCTCTATTTCCTTTTTGCATTGCATTGtagaagtttgtgtgtgtgtgtgtgactgttttgAGTATATTTTATTTAGTCACTTTTCCAGTGTTAACACGTATGTATTTGGCAATTTGACAATTGTAGTTGGAGTTATCAGTTATCACCAGAAACTCTTTTAATCTGCTGTTTTACCCAGCAACAATATACTGTACCTTTGAGCTcaataactgaaaataaaatgtgtgtgtggatgttagTGCAGTTAAACTTCACCTGGTTCTTTACATCTGTCACATagtttcctttctttctccagTCGATGGAGTCTGGGTGTGGGCCGTTGCTGCTGAAGTAGTTCCCCTTGGTAGCAGAGCAGTTCTGTGGCTCAGACCAGAGGAAAGACTTTCGAAATTCACTAAATGTCATGTCTGAAAACTGGTTCAGCGCCATTGTGAATGTGTGATTTCCTTCATTGTGTTTGTCAATCCTCCTCTTGTTCTCAGTGAATATCTGGAGTCTCTCGTAGTACTCCTTCATGCTGTACACTCTGTTGTGCTGTACATGGGGGAGTTACTGCTGTTAATAttgctacatacagtatattttaagATTAATTATGGGCATACATGAGTAGTGATCAGCTTATACGTTGTAATCATACAGTTCACACTTGAGCATCACACTTCAGAGATGTGCAGGTAACTTCCTCTCATaaccatatactgtacacattATGTTACACAGCGTTTGATTGATATAACTGATACATAACTCACCTGTGCCATCCATGACTTGAAGTGAAACTCGTCTGAAAACAATCCACATTGTCAAAATGTAGCCAATGTAATACAGAGAATTAAACAATGAGAACAAACTTAACACATGTAACGCCATGGTAGATTATGAAAGTGAAAGTAAAGCTTTGGTAAACACCGATGGTTAAAACATAATTCAACGTCAGTAAAAAGTAATTGTactgtaaacaacaacaacaaaaaacgtaCGATCGCAGCAGCTTACCTCGTTCAGATGACAGGTGAAAAGCTGAAGCTGCCGACAGCAAAgcaaacaaaagcaaattaGTGTTCATCATGATCGCTTAGCTGCGGTCGGTGCAACAGAGAAGGCGAGTGAAAGTGAAGTGAAGCAGATAAGTCACGAGGTGAACTGCTGCTGCCTGTTCAAATTCCCCTACTGACAAAAATACAATATCATGTCAGTGaattaatcaaccaatcagtgtcaAACATAACACCCATAAGCTTTATTTTCTTCCTCCTCTATTTAGGATATTTTGAGCGTTATACTGCATATTGTAATCTACCGCGTAAAAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114960 lncRNA downstream 20835 16650139 ~ 16659316 (-) False LOC120564211
XR_005640080.1 lncRNA downstream 20841 16649841 ~ 16659310 (-) True LOC120564211
TU114962 lncRNA downstream 24397 16654938 ~ 16655754 (-) True G85361
TU114961 lncRNA downstream 26419 16650139 ~ 16653732 (-) False LOC120564211
TU114949 lncRNA downstream 53202 16626731 ~ 16626949 (-) True G85353
TU114993 lncRNA upstream 14256 16697144 ~ 16700884 (-) False LOC120563869
TU115047 lncRNA upstream 101410 16784298 ~ 16787982 (-) True G85428
TU115063 lncRNA upstream 126394 16809282 ~ 16809502 (-) True G85436
TU115073 lncRNA upstream 128186 16811074 ~ 16816147 (-) True G85441
TU115089 lncRNA upstream 184239 16867127 ~ 16869163 (-) True G85453
XM_039807746.1 mRNA downstream 69248 16607362 ~ 16610903 (-) True ankrd34c
XM_039807747.1 mRNA downstream 85965 16581508 ~ 16594186 (-) True idh2
XM_039808187.1 mRNA downstream 147710 16529442 ~ 16532441 (-) True LOC120563779
XM_039807742.1 mRNA downstream 178668 16462555 ~ 16501483 (-) False sema4ba
XM_039808320.1 mRNA upstream 14207 16697095 ~ 16763718 (-) False LOC120563869
XM_039808318.1 mRNA upstream 14207 16697095 ~ 16763717 (-) False LOC120563869
XM_039808316.1 mRNA upstream 14207 16697095 ~ 16763717 (-) True LOC120563869
XM_039808317.1 mRNA upstream 14207 16697095 ~ 16763716 (-) False LOC120563869
XM_039808321.1 mRNA upstream 14207 16697095 ~ 16715164 (-) False LOC120563869
TU114908 other downstream 239186 16439374 ~ 16440965 (-) True G85321
TU114652 other downstream 1136069 15514778 ~ 15544082 (-) True G85133
TU114636 other downstream 1196225 15478982 ~ 15483926 (-) True ttc23
TU114482 other downstream 1606801 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 1712704 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
unassigned_transcript_374 other upstream 81827 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 125168 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_375 other upstream 1244159 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115583 other upstream 1348120 18031008 ~ 18036276 (-) True G85813
TU115584 other upstream 1348120 18031008 ~ 18036276 (-) False G85813

Expression Profile