RNA id: XM_039808320.1


Basic Information

Item Value
RNA id XM_039808320.1
length 6660
RNA type mRNA
GC content 0.41
exon number 15
gene id LOC120563869
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16697095 ~ 16763718 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGGCAGCGGTGAATGGTGAGAGATAATCCTCCGCTctaccacacagacacacaacagggCTGAGCTGTCTCTGGATCTGGATGCGGGCATCCTTGGATTCTGCTCTTAGCAAGGGCCCACTGCACGAAAACTTAACGGGACAACAATGGTGTACGCCTCGGCGACTAAATCCGTGGCTGCTGGTCGTTTAGGGGACCGGGGATTGTGGTCAATGTGACATTCACTAGCACGCTGGTGTTGAGTTTATTGTTCTGGTCCTAGACGCTGAGCAGCGATTCTTCTGAGAAGATGTTGAGCCGATTCATGAGTGGCAGCATCAGGAATCTTGAGCGGGAATACAGCTGTACCGTCAGACTGCTGGATGATACGGAATATACGTGCACCATTCAGCGGGATGCAAAGGGACAGTATCTGTTTGACCTCATCTGCCACCATCTCAACTTGCTGGAGAAAGACTATTTTGGCATCAGATATGTGGATCCAGACAAGCAgcggCACTGGTTGGAGTTCTCAAAATCAATTGCAAAGCAAATGAAATCTCAACCTCCATTCACCATGTGTCTGAGAGTCAAGTTCTACCCTCCTGAACCCGCTTCTCTAAAGGAGGAAATCACTCGATATCTTGTCTTCCTGCAAATCAAGAGAGACCTCTACCACGGTCGGCTCCTGTGTAAAACCTCGGACGCGGCCATGCTCGCTGCCCACATCCTTCAAGCTGAGATTGGTAATTACGACCCTGGGAAGCATCCTGAAGGTTACAGCTCCAAATTTCAGTTCTTCCCTAAACATTCGGAGAAGTTGGAGCGCCGGATTTCAGACATACACAAGACAGAGCTGATTGGACAGACACCTGAAACATCGGAGCGAAATTTCCTGCAGAAAGCCCAGATGCTGGAGACATATGGTGTTGATCCACATCCATGCAAGGATGTGTCCGGGAACCCAGCTTTCCTCGCCTTCACACCATTTGGTTTTGTGGTGCTTCAGGGAAACAGGAGAGTTCATTTTCTTAAATGGAACGAAGTGACCAAACTGAAGTTCGAAGGCAAGACCTTCCACGTACATGCAAATCAGAGGGAGGACAAAAAGATCATCTTGACATACTTTGCGCCCACACCGGAGGCATGCAAGCACCTTTGGAAGTGTGGAGTGGAGAACCAAGCTTTCTATAAGCTTGAGAAGTCGAGTCAGGTTCGAACGGTGTCCAGCAGCAACTTGTTCTTCAAGGGCAGCCGTTTCCGTTACAGTGGTCGAGTGGCAAAAGAGGTGATGGAGCAGAGTGCCAAAATCAAACGCGAACCTCCAGAAATACACAGAGCTGGCCTCGTGCCCAGCAGAAGTTGTCCATCCATCACACACGGGCCTCGCCTAACCAGTGTGCCGCGCACGCGTCGGAGAGCTGTGCACATATCTATCATGGAGGGTCTGGAGTCATTGCGTGACAGTGCCCACTCTACACCGGTGCGTTCAGTGTCCCATGGGGACTGCTTCATGCCACGCTCCCGGAGCCAGGCCACGGACGCCAGTGAGAGGACTGCGGTGATCTCAGACGAGGCCTACAGCCCGTCTGACAGCGTCCTGCCCACCCCGGTGGCCGAGCACAGCATGGAGCTGGCTGTCTCACGCCAGATCAACGGGGCGCCCTGCAGCATCGAGGAGGAGAAGGAGTCGGAGGCGGGCACCCCGATGCGCGGGGAAGGGGGGGATTTTGGTGCAGAGGAGGGTGCAGGGGGGGACTCGGCCCTCAGCGAGGTGGAACAGGCGGTGGTTTGCCTGCAAGCTCCGCTGGGTGGGCGGGTTGCTCATTAACAAGTGAGAGTGAGGTCGTAGAGTTCGTAAGCCCGTTCAGGGGTCTGAGATGACGGTTTAGGACTCCGGAGTGATGGAGGGCAGCCTCGTCCCAACCATGAACCCTGCTTGTCTCATCGTCCTCCTGCAGACATACAGCTTGGACCACTCCTGGTAACACCGGGCCTGATCTCTCTTCCCCTCCTCCACTTTGAGTTAACCCCCCCTACCCACCCAACCACCTCCTCGTTTcgcttgtttttttcttcttctttttctacaAAGCCTAAggactttttgtttttgcattttttttttaatttcaattcatttcaggtattttattttttcaaataacacaaaggaaaaaaattaaaacagaaatcaaAGAACTTTTTACAGGAAGATTTTGTTGCAACGGATGAACGTTGccttcatttattatttattgcttTTAAACATGTATTTGCATAAGGAAAGGAGAAAAGATGAACAGCAATCGAGAAGTTGATTTGTCATTAAAATGAAGATGGAGGTTAGTTTTGTTAAGAGTTGATAGGCCTACTGCTGTGAAGTATATGTGAGGCAAAGTAGTATAATATCTTTCGATATTGGTTCATCCCCATCAGAAGTCAACTAGACAAACGTCAGATTCAGTAAAAGCAGAACAATCTGAAGGGAATAAAACTGATAGCAGGCAGGGTGATTACCAAATGCCTTTTTCAAGAATAAGGCACCAAGCTACAGAAAAGGTTGATTTGTGGATTGTGTACAAAGTAAACTGATGAAGAACAACGTTGTATTTCTAACATTTTATAGGGATACCGTCAAATAAACCAGTTTATATTCCTGAAGAGCAAAGATTCGCTGGCACCAATAGATAAGTCTAGATAGATGTGCAATGCTCATATGGTTTTAATAATGAAGTACTTTTGAATGTGCTCATTTGTTCAGTTGTTCTGTTATTTCTCCATTTAATTTGATTTGCATTTTTCTCATCAAGTTGAAATTCGATGAATTTCAATAATTTCTTTGTATGAAGAGtttatgatttattttggtTTCATATCAACCTTGCACTTAGGTTTATGTAtcatactatattattattagaataAGAATAATGATGTACTTTTTGTACAAATTAGTTTGTTCTAGTAGTTTTCCTAATATATATTGACAGGTTTTCCatgtatattttaacagaactgaaatgttattttgttattgaaGATTAAATTATACCTTTTTTAGCGCTGTGTTTCAAGTAAGGTCAGAAGCATTTATGGAAATGTGGAAGTGGGGACTAAAAAAACAAGGTTTTTATCCAGATCCATTCAACACTGATCACACCTCTCATCAGTCCACCAGCAGTGAATCAGCCTTCAGTGTGCGCATCATTTTAATGATAGTGTTAATGAACATGTATTTGTACAAGAACCAAATAATCCAAAAGCACATTTTCACCTTTCATAATATTTACTATATACTTTACCATATCTCATTTTACTATAAGAGTTTGGAGAGGTGACTGTGAGCCTGACTGATACTGGGTCTTATCACTTGATCCTTGAACCATGGTCTATCCTCACACtgaaattcatttaaaaaagtaataaaacagaACTAAGGCTGAAACAATTCGTTAATCGATTGATAGAAAATTAATTGGCAGCTTTTTTAATAATTAGTAGCCATATTTCAAGCAAAATGGCAAATATTTTCTGGTTTCAGCAGAATTTCTCTGTTTCatatcattgtaaattgaatatatttgggttggAGAGTggtaaaaacagataaaaaaaaaaagttggcctATTTTGAATATGTCACCTTGGGTTCTAAGAAATCCTAATGGATTTCTttaactattttctgacattttattgaccCAACAATGAATGTATTCATCTAGAAAATAAtgggcagattaatcaataacgAAAATAAGTGTTTGCTGCAGCcctaaacaaaacatttttcattaaTAAATGAAGAATTAAAGGGGACCGGAAACACACCCTCTTTGGTGGAGGTAACCTTATGCACTTTGCTTGCACACAAATCTTTTTAATTACGTACTTTAGTTATTTCCTTACATTAATTTCCACATCACCCAAAATAGAAGCAGACACAAATATTTCTGTGAAAAGCTGATATTGGCGAATAATACCTGTCCTTAGATTTGTCTGTCAGGCTCGAGACTCTTCGGTCTCACAGCTCCAGGAAGCAATAACTGCCACGGCTGCTGGATTCTGGGTAAAATCTGTTTTTTGTATTGCGTGTATACCTCCTGCACCAAGTGCAGGTGTAAGTGttactgtgtctgtatgtaggAATGGAAATGAGATTAAAGGTTGTAGCAGTGAAGGATTAGACGGAGAGgtaaaaaagtaattttaaaaaaacttttgcaAAAGGCGAGAAGGACTTAgtggaaggaaaagagaaaggaaataCAATGAGAAAGAGGTAGAGAAGACTGAAGAATATCAGAGTCCTTCAAGAGGTTTTTGAAAGtgggatttaaaaaacaaattgggAATGTAAATGTCACTTGGTGACTCACCACTTCAATGGCTGCACGGGGTTGCTTGTTTTTTGGCCTGCTAATTTAAACGTCACACTCTCATACCAACACCTGCAGCTGCTCCACTAAAGGCCCGATGGTGCTACCTTCTTTGTTTGCTGTATTGCTGTATGTGTAATCCGAGCGTGTCAGGCCTTGGCTTAATTTTAGTCCTGACCATAGAGTAGCATGCACTTTGGCGTTGTGGCTGGATCCACTCCTGAAGCTCATTATCCTTCACTAGTTATCTGTGGTGGAGGGAGCACCACTGATATTTCTTAGCGCAATGCTAGAGGGAATGCCAAATCATTAGAGCTACCTTGGCAAGAAACCTGTCATATATGCAGTGTAGGAGCTTATTTATGTCAAGATAATAATTTGTAACTCGGATACAACCAGTAAATGGCGATGCAAAGATGAAGACATTTTTTCCTAACAGGGGTTGGAGCAGGGTGGGTgggttgacttttttttttgtacattcaTACTTCATATTTATTACTTCTTTACTGACCTAAAGATCAACATGACCGACCAGTGCAGCCGGGCTGAGTTGTTAGCAGGACATCTTTTAAAGGTCAGTCTGCAAAGGTGTTTCTCATACATCTATCAGCATTATGTAGCTTCAGTGGTCTCTCTGAAcatgcaacaataaaaaaaggcaGCATTATTCAAGGAGCAATAATCAGCTGTAAGAGCAAAAATATGTGATTTACAAACTTGTGTATGAAAATCCAACGATGAGTAAGTCAAATATGTCCTTTCTGTTTCTAGAAAACCACTTACCAAATTGCTGTTGTGCTGACTCTAACAATCATGTGACCACTGAGACACTTACTGTTGCATTCatatataacattttataaaaagaaaaaatagatttttccTTAGAGACCTCTGGATATttgttctgctgttttctttgctGCTTTATTGTTAAGTGACAGATTGTTCCCTGTGCCTGGATCCTAACTCTGCAGTTTACCAAAGTGACAAAGATGAAGGAATGGAGAACGAAAGACACAACATCCCTAACAACTGTACTACAGACTACTCCATCCTTAAATCTCCCAGGCCAAGCAGGAAAAACAGTTGTTTGTAATGTACTGGGCACCCCGAAGTCTGTCTTAATTTGTCTTTACAGGTTTCCTGTGACAAACCTGactttaattttacatttcatttgcTGTGTCATGTTTACATATTTTGCAGTTCTTTTACGTCATGGGAAATGGCTGCAGTTTTGGCAAGATGTGTGACTTTGGATGAACTTTTGATGTGATTGTCATCCATGGTTTACAAATCAGTAACAGCCTGTCCATTCTTAAAAAGCAGCAGTGAAGGTACAGCCATGCAAATACAGTGTGGTGCATTGGAAGATGAAGCATtgatttttgtttaaatttaatatacaGGGGGTGGACTCAATAACAGAAACACCCACATGATATAATGTAACAACCAAGCAACAAAATCTACCATTTGTGAAACTTATATTGTTATTAAGGGGTGGTCAAAGGGATGTTAAGGGTCATTTCTGAGGTGGTACTTTGTGGTGCTTTTGTACTGGACTGAACTTTACTGTgaggtgtttttgttgttttgtctacGCCCTGTATCTTGCTACATATTTTCAACCATCATCAGATGTCTTAATAAAAGTCTCACAAACCAATATATGTATGACATAATCAATTAAGTTAATAAGTTTAAAAAATTGTTATTGGCTGTCCTTTAAATacgtttttttaaaaggtttatGTTATTTATGTGATGAAAAAGAATTACATATCCAGTTTAGATGATCAAATCAAGTGATTTATACACAATCGGCTACCTAAGTTTAATTCCTGGCCAAAATCCCTGTCACATTAATATGGATGATGCATGTAGAACTGAGGAGTTGAGAAATTAAAGTAGTCATAACCGAAGACACCTTGATGTgcttttttggctctctgtcaGCTCCCAGTCGGCAGACACTCCCACAGCTGTGCATACACGTCAGTAAGTGTATATGCATCCATGTCTGGTGGCGTGTTATGTAGTCTGCAAGGTTCTATCATGGGGATTGGAGATTGCTGtttaattacattatatatacaagtatatatatatatataaatccatGTGCCAAATCCAGTTCTTGTTCAGTCTGATCCATTCCGAACCCATGTTTTTACTGTAAACTTCTGTACAAGTCAGTATAAAATATTGTTTCTCTCCAATAGTCCCTTGTAACTGGTGCCATTGAATAAAACTATTCAAACTTGAAATAAACATTGAATAAAAATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114976 lncRNA downstream 14207 16680151 ~ 16682888 (-) True G85373
TU114960 lncRNA downstream 37779 16650139 ~ 16659316 (-) False LOC120564211
XR_005640080.1 lncRNA downstream 37785 16649841 ~ 16659310 (-) True LOC120564211
TU114962 lncRNA downstream 41341 16654938 ~ 16655754 (-) True G85361
TU114961 lncRNA downstream 43363 16650139 ~ 16653732 (-) False LOC120564211
TU115047 lncRNA upstream 20580 16784298 ~ 16787982 (-) True G85428
TU115063 lncRNA upstream 45564 16809282 ~ 16809502 (-) True G85436
TU115073 lncRNA upstream 47356 16811074 ~ 16816147 (-) True G85441
TU115089 lncRNA upstream 103409 16867127 ~ 16869163 (-) True G85453
TU115097 lncRNA upstream 133966 16897684 ~ 16899795 (-) True G85460
XM_039807746.1 mRNA downstream 86192 16607362 ~ 16610903 (-) True ankrd34c
XM_039807747.1 mRNA downstream 102909 16581508 ~ 16594186 (-) True idh2
XM_039808187.1 mRNA downstream 164654 16529442 ~ 16532441 (-) True LOC120563779
XM_039807739.1 mRNA downstream 195374 16462555 ~ 16501721 (-) False sema4ba
XM_039809730.1 mRNA upstream 3211 16766929 ~ 16776366 (-) False malt3
XM_039809729.1 mRNA upstream 3211 16766929 ~ 16776366 (-) True malt3
XM_039807928.1 mRNA upstream 28436 16792154 ~ 16803322 (-) True slc28a1
XM_039807680.1 mRNA upstream 56596 16820314 ~ 16830164 (-) False si:dkey-24l11.2
XM_039807682.1 mRNA upstream 56596 16820314 ~ 16825506 (-) True si:dkey-24l11.2
TU114908 other downstream 256130 16439374 ~ 16440965 (-) True G85321
TU114652 other downstream 1153013 15514778 ~ 15544082 (-) True G85133
TU114636 other downstream 1213169 15478982 ~ 15483926 (-) True ttc23
TU114482 other downstream 1623745 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 1729648 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
unassigned_transcript_374 other upstream 997 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 44338 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_375 other upstream 1163329 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115583 other upstream 1267290 18031008 ~ 18036276 (-) True G85813
TU115584 other upstream 1267290 18031008 ~ 18036276 (-) False G85813

Expression Profile